Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a17
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.9  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   5.2  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    24   9.1  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    24   9.1  
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    24   9.1  

>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 301 DSREEAAALHERFVEYV 351
           +SREE  ALHE F E V
Sbjct: 367 ESREEIEALHETFTEEV 383


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 77  NNIKNTPYIPEFFNF 121
           NNI+N+P +PE ++F
Sbjct: 638 NNIENSPQLPERYDF 652


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +1

Query: 217 FHSQLELMATITSNHQRFXTADSPLXVMDSREEAAALHERFVEYVHT 357
           F  +L +   +  N +RF  AD  + ++D +     L +  ++ +HT
Sbjct: 99  FRGKLRMQKDV--NRKRFPLADRVVELVDEKLTGEVLLDEAIKMIHT 143


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -1

Query: 360 KGVNIFNESFMQCSCLFARIHHL*WGISGAEPLVVRRY 247
           KG N     F   +C FA      WG    E +V + Y
Sbjct: 71  KGSNKIKNLFTMFTCCFANDEEEIWGEETNESVVYKEY 108


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 101 IPEFFNFIGSIEDC 142
           +PE F  +GS EDC
Sbjct: 166 VPEGFELLGSTEDC 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,374,864
Number of Sequences: 5004
Number of extensions: 23526
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)