Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a17
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342...    27   6.5  

>08_01_0387 -
           3426058-3426168,3426279-3426473,3426612-3426724,
           3427121-3427157,3427270-3427341,3427849-3427962,
           3428129-3428200,3428343-3428381,3429340-3429414,
           3429561-3429674,3429749-3429813,3429927-3430047,
           3430942-3431063,3431547-3431634
          Length = 445

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 190 EPEVLRTDDFHSQLELMATITSNHQRFXTADSP 288
           +PEV  +  F ++  LM  I SNH+RF   D+P
Sbjct: 268 KPEVC-SYPFTTRGILMGHIVSNHERFQVTDTP 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,432,876
Number of Sequences: 37544
Number of extensions: 141741
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)