Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a17
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   8.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   8.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   8.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 56  QLIRKAKNNIKNTPYIPEFFNFIGSIEDCLPT 151
           +L+    N + N  Y  +FF F   I D LPT
Sbjct: 868 ELVPLEGNLMINNKYALKFFPFDKHILDKLPT 899


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 219 SFTIRTHGYDNVEPP 263
           +FT R HGY +V  P
Sbjct: 612 AFTYRMHGYASVVGP 626


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 99  YGVFFMLFFAFLINCXQGNNTNN 31
           YG  F   FAF+ N  + +N+++
Sbjct: 300 YGADFPFNFAFIKNVSRDSNSSD 322


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 346 YVHTLSDPNEI 378
           YVHT++ PN++
Sbjct: 131 YVHTITVPNKL 141


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 99  YGVFFMLFFAFLINCXQGNNTNN 31
           YG  F   FAF+ N  + +N+++
Sbjct: 300 YGADFPFNFAFIKNVSRDSNSSD 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,070
Number of Sequences: 438
Number of extensions: 1688
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)