Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a17
         (378 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1...    27   3.1  
At3g28470.1 68416.m03557 myb family transcription factor (MYB35)...    27   5.5  
At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2...    26   7.2  
At3g09600.1 68416.m01140 myb family transcription factor contain...    26   9.6  

>At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1.4)
           plant glutamate receptor family, PMID:11379626
          Length = 861

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 132 IEPMKLKNSGMY-GVFFMLFFAFLINCXQGNNTNNI 28
           +E   ++N+G +  +FF+ F +F + C   N  +N+
Sbjct: 1   MENCMIRNTGYFLTIFFLAFISFAVTCSGTNQKDNV 36


>At3g28470.1 68416.m03557 myb family transcription factor (MYB35)
           similar to Atmyb103 GB:AAD40692 from [Arabidopsis
           thaliana]; contains PFAM profile: myb DNA binding domain
           PF00249
          Length = 317

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +1

Query: 160 VTSRGYASF-TEPE--VLRTDDFHSQLELMATITSNHQRFXTADSPLXVMDSRE 312
           ++  G ASF TEP    + T   +S  E+M   T+NH+ + T +SP+   +S E
Sbjct: 139 ISGHGNASFKTEPSNNSILTQS-NSAWEMMRNTTTNHESYYT-NSPMMFTNSSE 190


>At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2.2)
           plant glutamate receptor family, PMID:11379626
          Length = 920

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 117 LKNSGMYGVFFMLFFAFLINCXQGNNTNNIHFNI 16
           +KNS ++  F  LFF F +   +G +      NI
Sbjct: 1   MKNSKLFFRFLFLFFFFCLESSRGQDNGKTQVNI 34


>At3g09600.1 68416.m01140 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 298

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 56  QLIRKAKNN--IKNTPYIPEFFNFIGSIED 139
           +++RKAK    +   P   E +NFIGS+ D
Sbjct: 199 EIVRKAKQPPVLHGVPDFAEVYNFIGSVFD 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,993,237
Number of Sequences: 28952
Number of extensions: 119028
Number of successful extensions: 249
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)