Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11a16
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17) 31 0.53
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_25060| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_29469| Best HMM Match : UCH (HMM E-Value=6.7e-06) 28 6.5
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 28 6.5
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_26429| Best HMM Match : Autophagy_N (HMM E-Value=2.8) 28 6.5
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 27 8.6
>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
Length = 1426
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 89 IRENAETSNVKDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCC 226
I E + K K N+ D P +N+EEC ++ C+ + C
Sbjct: 426 IEELLQALRAKLKRLPRNEKDAPQSEKNREECMKLAQECSRDLEKC 471
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 134 TANDLDKPVDYENKEECFQIGHSCTNHKDCCTNAC-LGYA 250
T D+D+ D N C IG SCTN+ T +C GYA
Sbjct: 590 TCTDIDECSDGTNT--CAPIGSSCTNNAGSYTCSCNAGYA 627
>SB_25060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +2
Query: 122 DKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCC---TNACLGYAKKCVSGS 271
D +T D D P ++ CF H+C + C ++AC G + C S
Sbjct: 184 DDPSTCXD-DSPTCGDDSHACFDDSHACFDDSHACFDDSHACFGDSHACYDDS 235
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 149 DKPVDYENKEECFQIGHSCTNHKDCC---TNACLGYAKKCVSGS 271
D +++ CF H+C + + C ++AC G K C S
Sbjct: 136 DSHACFDDSHACFDDSHACFDDSNACFGDSHACYGDPKACYDDS 179
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +2
Query: 146 LDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAKKCVSGSG*KRIK 289
L K VDY + IG C K C LG CV G G RI+
Sbjct: 584 LQKHVDYPLE---LVIGRGCNAQKHCGKVVLLGIVAMCVCGIGLDRIQ 628
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 217 GLLHECVSGLCEEMRFRVRVKADKKLVV 300
G L+ +S C E+ +R RV+A K+LVV
Sbjct: 103 GCLNSLISIHCHEVIYRQRVRAGKRLVV 130
>SB_29469| Best HMM Match : UCH (HMM E-Value=6.7e-06)
Length = 757
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 220 LLHECVSGLCEEMRFRVRVKADKKLVVYFIR--HHVSITK 333
+ ECV C ++FR+R+ D K++ + H +S T+
Sbjct: 437 MCRECVQRKCRSIQFRLRLNEDDKVIKALNKPSHKISTTR 476
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/36 (22%), Positives = 21/36 (58%)
Frame = -3
Query: 202 GMSNLKTFFFIFIIHGFVQIICSSIFILYV*SFCIF 95
GM++++ F +++ ++ +C + +L FC+F
Sbjct: 305 GMTDMEKLAFTYVLPTYILFLCGVVIVLSRRRFCVF 340
>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1240
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 140 NDLDKPVDYENKEECFQI--GHSCTNHKDCCTNACLGYAKKCVSGSG 274
ND D VD E+KE C + G++C KD C C S +G
Sbjct: 23 NDEDC-VDKESKEYCDNLVKGYACIYDKDMMWKDCKSRCSFCASAAG 68
>SB_26429| Best HMM Match : Autophagy_N (HMM E-Value=2.8)
Length = 219
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 229 ECVSGLCEEMRFRVRVKADKKLVVYFIRHHVSITK*YNNM 348
E + GL E RFR VK ++YF+ ++ IT+ N+
Sbjct: 68 EFIHGLIETPRFRKTVKKFLNELIYFLLLYMQITEDQRNL 107
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 474 PSRLDSPQPSYTPYPKNQKLNWNIFHISS 388
PS+L+SP+P TP PKN H+ S
Sbjct: 914 PSQLESPEPCVTP-PKNTLKQVGTCHLES 941
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,435,825
Number of Sequences: 59808
Number of extensions: 430661
Number of successful extensions: 1216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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