Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a16
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-11|AAK71367.1|  178|Caenorhabditis elegans Hypothetical...    31   0.62 
Z81534-5|CAB04348.2|  694|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z47074-2|CAA87377.2|  694|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    28   5.8  
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    28   5.8  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    28   5.8  
Z81589-7|CAB61028.1|   63|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z69902-2|CAA93764.1|  326|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    27   7.6  
X53245-1|CAA37335.1|   63|Caenorhabditis elegans metallothionein...    27   7.6  
M92910-1|AAA28111.1|   63|Caenorhabditis elegans metallothionein...    27   7.6  
M32387-1|AAA28118.1|   63|Caenorhabditis elegans protein ( C.ele...    27   7.6  
M32386-1|AAA28117.1|   63|Caenorhabditis elegans protein ( C.ele...    27   7.6  
D17365-1|BAA04181.1|   63|Caenorhabditis elegans metallothionein...    27   7.6  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    27   7.6  
AF022978-7|AAG24177.2|  403|Caenorhabditis elegans Nuclear hormo...    27   7.6  

>AF125955-11|AAK71367.1|  178|Caenorhabditis elegans Hypothetical
           protein F46E10.11 protein.
          Length = 178

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 25  NVSCSTCTLHCFCRRIR-DWKCNKGKCR 105
           N + +TC+   +C++IR +W+C  G CR
Sbjct: 64  NCNTATCSTSSYCQQIRSNWRCINGCCR 91


>Z81534-5|CAB04348.2|  694|Caenorhabditis elegans Hypothetical
           protein F37H8.2 protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 333 FCNRYMMSNKINDKFFIRFYPDPETHFFA*PRHAFVQQSLWLVQ 202
           FC   ++S+   ++FFI F P      F+   H F  Q + L+Q
Sbjct: 127 FCQELLVSSPFFERFFIFFIPRVSGMLFSTIFHTFCSQLMELLQ 170


>Z47074-2|CAA87377.2|  694|Caenorhabditis elegans Hypothetical
           protein F37H8.2 protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 333 FCNRYMMSNKINDKFFIRFYPDPETHFFA*PRHAFVQQSLWLVQ 202
           FC   ++S+   ++FFI F P      F+   H F  Q + L+Q
Sbjct: 127 FCQELLVSSPFFERFFIFFIPRVSGMLFSTIFHTFCSQLMELLQ 170


>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 524 WKISESAMKEIQHF-AANPPDLTHL 453
           W+  E   +EIQHF  A+PP LT L
Sbjct: 82  WEDQEKLRQEIQHFKTASPPTLTPL 106


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 524 WKISESAMKEIQHF-AANPPDLTHL 453
           W+  E   +EIQHF  A+PP LT L
Sbjct: 82  WEDQEKLRQEIQHFKTASPPTLTPL 106


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = +2

Query: 146 LDKPVDYENKEECFQ----IGHSCTNHKDCCTN 232
           L+   +Y    ECF     I   CT+ +DCC N
Sbjct: 688 LNTSFEYSKSRECFHDANLIQEKCTHLRDCCPN 720


>Z81589-7|CAB61028.1|   63|Caenorhabditis elegans Hypothetical
           protein T08G5.10 protein.
          Length = 63

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 119 KDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAK 253
           K++N + N   K  D  + + C Q      + K CC + C G  K
Sbjct: 8   KNQNCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGGCK 52


>Z69902-2|CAA93764.1|  326|Caenorhabditis elegans Hypothetical
           protein C47D12.3 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 345 YVFK*KSCLELLCCVRKYEKYSNLIFDFSDRVY-RMVEVSQVWRVSGKMLDLFH 503
           Y F   +CL L     K EK  N++ ++    Y   + V ++W+        FH
Sbjct: 30  YFFSTANCLNLFVSNAKLEKARNIVLEYKQGKYDPNMTVDELWKAKTLYDSAFH 83


>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
           protein K08E5.3b protein.
          Length = 3183

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 176 EECFQIGHSCTNHKDCCTNACLGYAKKCVSG 268
           +EC    H+C  H D C +   GY  KC SG
Sbjct: 83  DECALGRHTCDPHAD-CIDTHQGYTCKCRSG 112


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 176 EECFQIGHSCTNHKDCCTNACLGYAKKCVSG 268
           +EC    H+C  H D C +   GY  KC SG
Sbjct: 667 DECALGRHTCDPHAD-CIDTHQGYTCKCRSG 696


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
           protein K08E5.3b protein.
          Length = 3183

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 176 EECFQIGHSCTNHKDCCTNACLGYAKKCVSG 268
           +EC    H+C  H D C +   GY  KC SG
Sbjct: 83  DECALGRHTCDPHAD-CIDTHQGYTCKCRSG 112


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 176 EECFQIGHSCTNHKDCCTNACLGYAKKCVSG 268
           +EC    H+C  H D C +   GY  KC SG
Sbjct: 667 DECALGRHTCDPHAD-CIDTHQGYTCKCRSG 696


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 104 ETSNVKDKNTTANDLDKPVDYENKEE 181
           +TS   D+NT+A + D+P D +N  E
Sbjct: 18  DTSQELDENTSAKETDQPKDAQNDPE 43


>X53245-1|CAA37335.1|   63|Caenorhabditis elegans metallothionein-II
           protein.
          Length = 63

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 119 KDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAK 253
           K++N + N   K  D  + + C Q      + K CC + C G  K
Sbjct: 8   KNQNCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGGCK 52


>M92910-1|AAA28111.1|   63|Caenorhabditis elegans metallothionein-2
           protein.
          Length = 63

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 119 KDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAK 253
           K++N + N   K  D  + + C Q      + K CC + C G  K
Sbjct: 8   KNQNCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGGCK 52


>M32387-1|AAA28118.1|   63|Caenorhabditis elegans protein (
           C.elegans metallothionein-like protein (MT-Ce) mRNA,
           clone MTCe-2, complete cds.).
          Length = 63

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 119 KDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAK 253
           K++N + N   K  D  + + C Q      + K CC + C G  K
Sbjct: 8   KNQNCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGGCK 52


>M32386-1|AAA28117.1|   63|Caenorhabditis elegans protein (
           C.elegans metallothionein-like protein (MT-Ce) mRNA,
           clone MTCe-1, complete cds.).
          Length = 63

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 119 KDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAK 253
           K++N + N   K  D  + + C Q      + K CC + C G  K
Sbjct: 8   KNQNCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGGCK 52


>D17365-1|BAA04181.1|   63|Caenorhabditis elegans metallothionein-II
           protein.
          Length = 63

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 119 KDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAK 253
           K++N + N   K  D  + + C Q      + K CC + C G  K
Sbjct: 8   KNQNCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGGCK 52


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
           cell adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 176 EECFQIGHSCTNHKDCCTNACLGYAKKCVSG 268
           +EC    H+C  H D C +   GY  KC SG
Sbjct: 667 DECALGRHTCDPHAD-CIDTHQGYTCKCRSG 696


>AF022978-7|AAG24177.2|  403|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 131 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 7   QTKLGHN---VSCSTCTLHCFCRRIRDWKCNKGKCRNFKRKG*KYYCK 141
           Q   GH+   +SC  C    F RR  D K ++ KC +    G  Y+CK
Sbjct: 15  QNGQGHHFGVISCRACA--AFFRRAADSKWSRMKCLSKYCDGKTYHCK 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,888,718
Number of Sequences: 27780
Number of extensions: 345057
Number of successful extensions: 1059
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)