Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a16
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         24   0.98 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   6.9  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   6.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.9  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   9.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   9.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   9.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   9.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.1  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +1

Query: 25  NVSCSTCTLHCFCRRIRDWKCNKGKC 102
           +++ S C + C  +R +   C  G C
Sbjct: 75  SINHSACAIRCLAQRRKGGSCRNGVC 100


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +2

Query: 224 CTNACLGYAKKCVSG 268
           C N    Y K C+SG
Sbjct: 290 CVNIVTSYCKTCISG 304


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -3

Query: 124 ILYV*SFCIFPYCISSHVSDDKNNAKYKYY 35
           ++YV  F   P  +++ +   +N A Y+Y+
Sbjct: 256 VIYVKRFFGLPVGVTAAIPTSENPADYRYF 285


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -3

Query: 124 ILYV*SFCIFPYCISSHVSDDKNNAKYKYY 35
           ++YV  F   P  +++ +   +N A Y+Y+
Sbjct: 256 VIYVKRFFGLPVGVTAAIPTSENPADYRYF 285


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -3

Query: 124 ILYV*SFCIFPYCISSHVSDDKNNAKYKYY 35
           ++YV  F   P  +++ +   +N A Y+Y+
Sbjct: 256 VIYVKRFFGLPVGVTAAIPTSENPADYRYF 285


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = +1

Query: 40  TCTLHCFCRRIRDWKCNKGKC 102
           TC   C C   R W  N   C
Sbjct: 760 TCPAGCKCYNDRTWNTNAVDC 780


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 220 LLHECVSGLCEEMRFRVRVKADKK 291
           LLH   SG CE   F  +  A +K
Sbjct: 407 LLHALTSGKCEHRPFEPKSTAVQK 430


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 52  HCFCRRIRDWKCNKGKCRNFKRKG*KY 132
           H   R  R+  C++ + R +K+K  +Y
Sbjct: 226 HTSSRYSRERSCSRDRNREYKKKDRRY 252


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 516 FGKRHERDPTFCR*PSRLDSPQPSYTP 436
           +G R ERDP      S   SP PS  P
Sbjct: 425 YGIRVERDPILTPPSSNPVSPVPSPDP 451


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 58  NNAKYKYYTRHYDQVLF 8
           NN KY Y   +Y++ L+
Sbjct: 93  NNYKYNYNNNNYNKKLY 109


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 58  NNAKYKYYTRHYDQVLF 8
           NN KY Y   +Y++ L+
Sbjct: 93  NNYKYNYNNNNYNKKLY 109


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 58  NNAKYKYYTRHYDQVLF 8
           NN KY Y   +Y++ L+
Sbjct: 93  NNYKYNYNNNNYNKKLY 109


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 58  NNAKYKYYTRHYDQVLF 8
           NN KY Y   +Y++ L+
Sbjct: 93  NNYKYNYNNNNYNKKLY 109


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 185 FQIGHSCTNHKDCCTNACLGYAKKCVSG 268
           F++GH       C     +G AKK V+G
Sbjct: 575 FKLGHPEPPESVCSLPCEVGQAKKYVAG 602


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,417
Number of Sequences: 438
Number of extensions: 4504
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)