Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a14
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.6  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 636 TSLERRVNWNLPYILRHKCQLR 701
           T  E  V WN+P  + HK  LR
Sbjct: 39  TVREFNVYWNVPTFMCHKYGLR 60


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 151 FKYEGVHIRTRGPSR 195
           FKY+G+ I  + PSR
Sbjct: 539 FKYQGITILEKKPSR 553


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 257 GTLPACETDPNTA 295
           GT+ AC T P TA
Sbjct: 25  GTIQACTTSPATA 37


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 461 SPRLLYQLSTVQGDTVGGIHRNEL 390
           +PR   +L  V GD   G H N L
Sbjct: 179 TPRQQEELCLVCGDRASGYHYNAL 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,494
Number of Sequences: 438
Number of extensions: 4310
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)