Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11a14
(771 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 273 7e-74
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 273 7e-74
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 273 1e-73
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 273 1e-73
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 271 3e-73
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 271 3e-73
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 270 5e-73
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 155 2e-38
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 155 2e-38
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 155 2e-38
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 154 7e-38
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 153 9e-38
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 151 5e-37
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 151 7e-37
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 149 3e-36
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 144 4e-35
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 118 6e-27
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 117 1e-26
At4g30150.1 68417.m04287 expressed protein 29 3.4
At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.4
At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.4
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 7.9
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 7.9
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 7.9
At4g33990.1 68417.m04823 pentatricopeptide (PPR) repeat-containi... 28 7.9
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 273 bits (670), Expect = 7e-74
Identities = 123/204 (60%), Positives = 156/204 (76%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRECIS+H+GQAG+Q+G ACW+LYCLEHGI+PDG +P+ +T D FNTFFSE G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKT-VGGGDDAFNTFFSETGAG 59
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
K VPR V VDLE TVIDEVR+G YRQL+HPEQLI+GKEDAANN+ARGHY+ G+E++ +
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+RIRKLAD CTGLQ LL+E+LS ++GKKSKL F +YP+PQVST
Sbjct: 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Query: 698 AVVEPYNAVLTTHATISHSDCAFM 769
+VVEPYN+VL+TH+ + H+D + +
Sbjct: 180 SVVEPYNSVLSTHSLLEHTDVSIL 203
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 273 bits (670), Expect = 7e-74
Identities = 123/204 (60%), Positives = 156/204 (76%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRECIS+H+GQAG+Q+G ACW+LYCLEHGI+PDG +P+ +T D FNTFFSE G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKT-VGGGDDAFNTFFSETGAG 59
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
K VPR V VDLE TVIDEVR+G YRQL+HPEQLI+GKEDAANN+ARGHY+ G+E++ +
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+RIRKLAD CTGLQ LL+E+LS ++GKKSKL F +YP+PQVST
Sbjct: 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Query: 698 AVVEPYNAVLTTHATISHSDCAFM 769
+VVEPYN+VL+TH+ + H+D + +
Sbjct: 180 SVVEPYNSVLSTHSLLEHTDVSIL 203
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 273 bits (669), Expect = 1e-73
Identities = 123/204 (60%), Positives = 155/204 (75%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRECIS+H+GQAG+Q+G ACW+LYCLEHGI+PDG +P +T D FNTFFSE G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKT-VGGGDDAFNTFFSETGAG 59
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
K VPR V VDLE TVIDEVR+G YRQL+HPEQLI+GKEDAANN+ARGHY+ G+E++ +
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+RIRKLAD CTGLQ LL+E+LS ++GKKSKL F +YP+PQVST
Sbjct: 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Query: 698 AVVEPYNAVLTTHATISHSDCAFM 769
+VVEPYN+VL+TH+ + H+D + +
Sbjct: 180 SVVEPYNSVLSTHSLLEHTDVSIL 203
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 273 bits (669), Expect = 1e-73
Identities = 123/204 (60%), Positives = 155/204 (75%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRECIS+H+GQAG+Q+G ACW+LYCLEHGI+PDG +P +T D FNTFFSE G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKT-VGGGDDAFNTFFSETGAG 59
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
K VPR V VDLE TVIDEVR+G YRQL+HPEQLI+GKEDAANN+ARGHY+ G+E++ +
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+RIRKLAD CTGLQ LL+E+LS ++GKKSKL F +YP+PQVST
Sbjct: 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Query: 698 AVVEPYNAVLTTHATISHSDCAFM 769
+VVEPYN+VL+TH+ + H+D + +
Sbjct: 180 SVVEPYNSVLSTHSLLEHTDVSIL 203
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 271 bits (665), Expect = 3e-73
Identities = 123/204 (60%), Positives = 155/204 (75%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRE IS+H+GQAG+Q+G +CW+LYCLEHGI+PDG +P+ +T A FNTFFSE G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPS-DTTVGVAHDAFNTFFSETGAG 59
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
K VPR V VDLE TVIDEVR+G YRQL+HPEQLI+GKEDAANN+ARGHY+ G+E++ +
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+R+RKLAD CTGLQ LL+E+LS ++GKKSKL F IYP+PQVST
Sbjct: 120 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Query: 698 AVVEPYNAVLTTHATISHSDCAFM 769
AVVEPYN+VL+TH+ + H+D A +
Sbjct: 180 AVVEPYNSVLSTHSLLEHTDVAVL 203
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 271 bits (665), Expect = 3e-73
Identities = 123/204 (60%), Positives = 155/204 (75%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRE IS+H+GQAG+Q+G +CW+LYCLEHGI+PDG +P+ +T A FNTFFSE G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPS-DTTVGVAHDAFNTFFSETGAG 59
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
K VPR V VDLE TVIDEVR+G YRQL+HPEQLI+GKEDAANN+ARGHY+ G+E++ +
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+R+RKLAD CTGLQ LL+E+LS ++GKKSKL F IYP+PQVST
Sbjct: 120 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Query: 698 AVVEPYNAVLTTHATISHSDCAFM 769
AVVEPYN+VL+TH+ + H+D A +
Sbjct: 180 AVVEPYNSVLSTHSLLEHTDVAVL 203
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 270 bits (663), Expect = 5e-73
Identities = 124/200 (62%), Positives = 154/200 (77%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRE IS+H+GQAG+Q+G +CW+LYCLEHGI+PDGT+P+ T D+ FNTFFSE G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDA-FNTFFSETSSG 59
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
+ VPR V +DLE TVIDEVR+G YRQL+HPEQLI+GKEDAANN+ARGHY+ GRE++ +
Sbjct: 60 QHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCL 119
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
ER+RKLAD CTGLQ LL+E+LS +FGKKSKL F IYP+PQVST
Sbjct: 120 ERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVST 179
Query: 698 AVVEPYNAVLTTHATISHSD 757
AVVEPYN+VL+TH+ + H+D
Sbjct: 180 AVVEPYNSVLSTHSLLEHTD 199
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 155 bits (377), Expect = 2e-38
Identities = 72/200 (36%), Positives = 113/200 (56%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRE + + GQ G Q+G W++ C EHGI P G D + N +++EA G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTG---DSDLQLERINVYYNEASCG 57
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
+ VPR V++DLE +D +RSG Y Q + P+ + G+ A NN+A+GHY+ G E++ V+
Sbjct: 58 RFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+ +RK A+ C LQ LL+ K+ +E+ + L F+++P+P+VS
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
Query: 698 AVVEPYNAVLTTHATISHSD 757
VVEPYNA L+ H + ++D
Sbjct: 178 TVVEPYNATLSVHQLVENAD 197
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 155 bits (377), Expect = 2e-38
Identities = 72/200 (36%), Positives = 113/200 (56%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRE + + GQ G Q+G W++ C EHGI P G D + N +++EA G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTG---DSDLQLERINVYYNEASCG 57
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
+ VPR V++DLE +D +RSG Y Q + P+ + G+ A NN+A+GHY+ G E++ V+
Sbjct: 58 RFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+ +RK A+ C LQ LL+ K+ +E+ + L F+++P+P+VS
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
Query: 698 AVVEPYNAVLTTHATISHSD 757
VVEPYNA L+ H + ++D
Sbjct: 178 TVVEPYNATLSVHQLVENAD 197
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 155 bits (377), Expect = 2e-38
Identities = 72/200 (36%), Positives = 113/200 (56%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRE + V GQ G Q+G W++ C EHG+ P G D N +++EA G
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLER--INVYYNEASGG 58
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
+ VPR V++DLE +D +RSG Y Q++ P+ + G+ A NN+A+GHY+ G E++ V+
Sbjct: 59 RYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 118
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+ +RK A+ C LQ LL+ K+ +E+ + L F+++P+P+VS
Sbjct: 119 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 178
Query: 698 AVVEPYNAVLTTHATISHSD 757
VVEPYNA L+ H + ++D
Sbjct: 179 TVVEPYNATLSVHQLVENAD 198
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 154 bits (373), Expect = 7e-38
Identities = 73/200 (36%), Positives = 116/200 (58%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRE + + GQ G Q+G W++ C EHGI D T +C D + N +F+EA G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGI--DQTGQSCG-DTDLQLERINVYFNEASGG 57
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
K VPR V++DLE +D +RSG + Q++ P+ + G+ A NN+A+GHY+ G E++ V+
Sbjct: 58 KYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+ +RK A+ C LQ LL+ K+ +E+ + + F+++P+P+VS
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSD 177
Query: 698 AVVEPYNAVLTTHATISHSD 757
VVEPYNA L+ H + ++D
Sbjct: 178 TVVEPYNATLSVHQLVENAD 197
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 153 bits (372), Expect = 9e-38
Identities = 73/200 (36%), Positives = 113/200 (56%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRE + + GQ G Q+G W++ C EHGI G E D N +++EA G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQG-ENDLQLER--VNVYYNEASCG 57
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
+ VPR V++DLE +D VRSG Y Q++ P+ + G+ A NN+A+GHY+ G E++ V+
Sbjct: 58 RFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+ +RK A+ C LQ LL+ K+ +E+ + L F+++P+P+VS
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
Query: 698 AVVEPYNAVLTTHATISHSD 757
VVEPYNA L+ H + ++D
Sbjct: 178 TVVEPYNATLSVHQLVENAD 197
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 151 bits (366), Expect = 5e-37
Identities = 70/200 (35%), Positives = 114/200 (57%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRE + + GQ G Q+G W++ C EHGI P G + + N +++EA G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVG---NSDLQLERVNVYYNEASCG 57
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
+ VPR +++DLE +D VR+G Y Q++ P+ + G+ A NN+A+GHY+ G E++ V+
Sbjct: 58 RYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 117
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+ +RK A+ C LQ LL+ K+ +E+ + L F+++P+P+VS
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
Query: 698 AVVEPYNAVLTTHATISHSD 757
VVEPYNA L+ H + ++D
Sbjct: 178 TVVEPYNATLSVHQLVENAD 197
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 151 bits (365), Expect = 7e-37
Identities = 70/200 (35%), Positives = 112/200 (56%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRE + + GQ G Q+G W++ C EHGI G D N +++EA G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLER--INVYYNEASGG 58
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
+ VPR V++DLE +D +RSG + Q++ P+ + G+ A NN+A+GHY+ G E++ V+
Sbjct: 59 RYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 118
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+ +RK A+ C LQ LL+ K+ +E+ + L F+++P+P+VS
Sbjct: 119 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 178
Query: 698 AVVEPYNAVLTTHATISHSD 757
VVEPYNA L+ H + ++D
Sbjct: 179 TVVEPYNATLSVHQLVENAD 198
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 149 bits (360), Expect = 3e-36
Identities = 71/200 (35%), Positives = 112/200 (56%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRE + + GQ G Q+G W++ LEHGI G D N +++EA G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVG---DSELQLERVNVYYNEASCG 57
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
+ VPR V++DLE +D VRSG Y Q++ P+ + G+ A NN+A+GHY+ G E++ V+
Sbjct: 58 RYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+ +RK A+ C LQ LL+ K+ +E+ + + F+++P+P+VS
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSD 177
Query: 698 AVVEPYNAVLTTHATISHSD 757
VVEPYNA L+ H + ++D
Sbjct: 178 TVVEPYNATLSVHQLVENAD 197
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 144 bits (350), Expect = 4e-35
Identities = 70/200 (35%), Positives = 113/200 (56%)
Frame = +2
Query: 158 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 337
MRE + + GQ G Q+G W++ C EHGI D T P + + +F+EA G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGI--DHTGQYVGDSPLQLER-IDVYFNEASGG 57
Query: 338 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 517
K VPR V++DLE +D +RSG + Q++ P+ + G+ A NN+A+GHY+ G E++ V+
Sbjct: 58 KYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 518 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYPAPQVST 697
+ +RK A+ LQ LL+ K+ +E+ + + F+++P+P+VS
Sbjct: 118 DVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSD 177
Query: 698 AVVEPYNAVLTTHATISHSD 757
VVEPYNA L+ H + ++D
Sbjct: 178 TVVEPYNATLSVHQLVENAD 197
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 118 bits (283), Expect = 6e-27
Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 3/203 (1%)
Frame = +2
Query: 161 RECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRGK 340
RE I++ VGQ G Q+G+ W+ CLEHGI DG L T + FF +AD
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRK---DVFFYQADDQH 59
Query: 341 MVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKE--DAANNYARGHYSTGREVLSPV 514
+PR +++DLE VI+ +++GEYR LY+ E + A NN+A G Y G+ V +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEI 118
Query: 515 MERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYP-APQV 691
M+ I + AD L+ L+E L+D + KK ++++P +
Sbjct: 119 MDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMET 178
Query: 692 STAVVEPYNAVLTTHATISHSDC 760
S VV+PYN++LT ++DC
Sbjct: 179 SDVVVQPYNSLLTLKRLTLNADC 201
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 117 bits (281), Expect = 1e-26
Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 3/203 (1%)
Frame = +2
Query: 161 RECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRGK 340
RE I++ VGQ G Q+G+ W+ CLEHGI DG L T + FF +AD
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRK---DVFFYQADDQH 59
Query: 341 MVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKE--DAANNYARGHYSTGREVLSPV 514
+PR +++DLE VI+ +++G+YR LY+ E + A NN+A G Y G+ V +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEI 118
Query: 515 MERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFGKKSKLEFAIYP-APQV 691
M+ I + AD L+ L+E L+D + KK ++++P +
Sbjct: 119 MDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMET 178
Query: 692 STAVVEPYNAVLTTHATISHSDC 760
S VV+PYN++LT ++DC
Sbjct: 179 SDVVVQPYNSLLTLKRLTLNADC 201
>At4g30150.1 68417.m04287 expressed protein
Length = 2009
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 614 LLMEKLSDEFGKKSKLEFAIYPAPQVSTAVVEPYNAVLTTHATISHSDCAFM 769
+L+E + D G + L+F S V+EP++ L TH T + C F+
Sbjct: 277 VLVENIKDSLGDRHVLKF--------SCLVLEPFSRFLMTHPTTKNGFCDFL 320
>At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glycosyltransferase family
Length = 479
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 263 LPACETDPNTADSCFNTFFSEADRGKMVPRVVMVDLEATVIDEVRS 400
+P+ NT D N F EADR K +++ ++ D VRS
Sbjct: 195 IPSFIRATNTEDIMLNFFVHEADRAKRASAIILNTFDSLEHDVVRS 240
>At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glycosyltransferase family
Length = 309
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 263 LPACETDPNTADSCFNTFFSEADRGKMVPRVVMVDLEATVIDEVRS 400
+P+ NT D N F EADR K +++ ++ D VRS
Sbjct: 25 IPSFIRATNTEDIMLNFFVHEADRAKRASAIILNTFDSLEHDVVRS 70
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 262 GSVRSDPVLQAV*LPARDAHLDPGLAHVYGYALPHI 155
GSV SD Q LP++ +H L+ YGY + ++
Sbjct: 384 GSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNV 419
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 262 GSVRSDPVLQAV*LPARDAHLDPGLAHVYGYALPHI 155
GSV SD Q LP++ +H L+ YGY + ++
Sbjct: 384 GSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNV 419
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 262 GSVRSDPVLQAV*LPARDAHLDPGLAHVYGYALPHI 155
GSV SD Q LP++ +H L+ YGY + ++
Sbjct: 384 GSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNV 419
>At4g33990.1 68417.m04823 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 823
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 617 LMEKLSDEFGKKSKLEFAIYPAPQVSTAVVEPYNAVLTTHATISHSDCAFM 769
++ L+D +GK +LE A+ Q+ P+N ++ H H + A M
Sbjct: 488 VVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVM 538
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,528,847
Number of Sequences: 28952
Number of extensions: 308427
Number of successful extensions: 878
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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