Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11a13
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 31 0.14
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.43
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 30 0.43
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 29 0.74
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 3.0
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 27 4.0
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 31.5 bits (68), Expect = 0.14
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 9/135 (6%)
Frame = +3
Query: 396 SGVKPGTLQESHLWPQYVKERIKT-TYGY---IAGSLVLTAGSAVAVFRTPALLNLVARN 563
SG PGT+ P ++ E + + + G+ IA + TAG+ + TP+ + +
Sbjct: 667 SGSVPGTVLVDVPTPSWITETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTS 726
Query: 564 GWMSIIVTLGLMIGS--GMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPILM 737
G + T+ IGS G V+ + TP + + G + PI G +L+
Sbjct: 727 GSIGFTTTIATPIGSTAGTVLVDVP-TPSW-VTETVTSGSVGFTTTIATPIGSTAGTVLV 784
Query: 738 ---RAAWYTAGVVGG 773
+W T V G
Sbjct: 785 DIPTPSWVTETVTSG 799
Score = 28.3 bits (60), Expect = 1.3
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 9/134 (6%)
Frame = +3
Query: 399 GVKPGTLQESHLWPQYVKERIKT-TYGY---IAGSLVLTAGSAVAVFRTPALLNLVARNG 566
G GT+ P +V E + + + G+ IA + TAG+ V TP+ + +G
Sbjct: 812 GTTAGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVVVDVPTPSWVTETVTSG 871
Query: 567 WMSIIVTLGLMIGS--GMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPILM- 737
+ T+ IGS G V+ + TP + + G + P+ G +L+
Sbjct: 872 SVGFTTTIATPIGSTAGTVLVDIP-TPSW-VTETVTSGSVGFTTTIATPVGTTAGTVLVD 929
Query: 738 --RAAWYTAGVVGG 773
+W T V G
Sbjct: 930 IPTPSWVTETVTSG 943
Score = 25.4 bits (53), Expect = 9.2
Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 9/134 (6%)
Frame = +3
Query: 399 GVKPGTLQESHLWPQYVKERIKT-TYGY---IAGSLVLTAGSAVAVFRTPALLNLVARNG 566
G GT+ P +V E + + + G+ IA + TAG+ + TP+ + +G
Sbjct: 884 GSTAGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTETVTSG 943
Query: 567 WMSIIVTLGLMIG--SGMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPILM- 737
+ T+ IG +G V+ + TP + + G + P+ G +L+
Sbjct: 944 SVGFTTTIATPIGTTAGTVLVDIP-TPSW-VTETVTSGSVGFTTTIATPVGTTAGTVLVD 1001
Query: 738 --RAAWYTAGVVGG 773
+W T V G
Sbjct: 1002 IPTPSWVTETVTSG 1015
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 29.9 bits (64), Expect = 0.43
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 116 NKRIINYVITNVYRSLGVQ---CNAESKIASTTKFCTEKL 226
N+R+INYV+TN++ + Q A +A++ K C + L
Sbjct: 479 NERVINYVLTNIFEDMVSQSPPIPASKLMATSLKKCVQSL 518
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 29.9 bits (64), Expect = 0.43
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 622 LTTMPEPIIRPNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYVVFIRSF 449
+TT PII+ + +H ++ F G LKT + K PA+ P V+ I+ F
Sbjct: 336 ITTANVPIIKFVDPLTKVHVDIS--FNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHF 391
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 29.1 bits (62), Expect = 0.74
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +3
Query: 417 LQESHLW---PQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVT 587
L+ LW P +K+++K+ GS AG + A +A N W ++VT
Sbjct: 74 LEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYELATNQWPDLMVT 133
Query: 588 LGLMIGSG 611
L +G G
Sbjct: 134 LVANVGEG 141
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -3
Query: 610 PEPIIRPNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYV 467
P+P PNVT++ P A + + + T + +P T + + P+V
Sbjct: 115 PQPQSHPNVTVISASPARAIEQQPTILSSTDSNIPRPGTVKSSASPFV 162
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +1
Query: 202 HKILYRET--MWSEIMHENLEQGSLHA 276
H I++RET +WSE+M Q S++A
Sbjct: 78 HVIVWRETGGVWSELMDHTAHQASVNA 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,105
Number of Sequences: 5004
Number of extensions: 77959
Number of successful extensions: 227
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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