Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11a13
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0392 - 13432385-13432622,13432734-13433104 32 0.58
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 30 1.8
12_01_0025 + 203476-203655,205006-205233,205317-206000 29 4.1
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 29 4.1
10_08_0333 - 16850267-16851802 29 4.1
03_01_0092 - 731069-731434,731569-733080 29 4.1
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 5.4
07_01_0313 + 2216498-2216953 29 5.4
03_02_0578 + 9603118-9605633,9605766-9605781 29 5.4
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426... 29 5.4
07_01_0979 - 8270980-8271654,8271984-8272088 28 7.2
03_04_0061 - 16949038-16950006 28 7.2
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 28 7.2
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 28 9.5
07_01_0310 + 2209084-2209554 28 9.5
>05_03_0392 - 13432385-13432622,13432734-13433104
Length = 202
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +3
Query: 528 RTPALLNLVARNGWMSIIVTLGLMIGSGMVVRGMEYTPGFGAKQLAWMAHTGIM 689
R P+ R+ ++V G ++G G V G EY G + W H ++
Sbjct: 5 RNPSRHRRPRRSDLRDVVVDRGEVVGGGGKVEGREYVGGLAGHLVVWAPHIALL 58
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +3
Query: 129 LIMLSRMCIGRSAFNVTQSLKSPVPQNFVPRNYVVRNYAREPRTRVATRSQPTLRERLMA 308
L+ L ++ I SA+ V P+P NF+ R +VR P R + RS T A
Sbjct: 40 LLFLPKIDIPFSAYLVLHKSGIPLPPNFLHRRDLVRARGILPVRRSSARSSTTALTCPAA 99
Query: 309 PAGPNA 326
PN+
Sbjct: 100 AGDPNS 105
>12_01_0025 + 203476-203655,205006-205233,205317-206000
Length = 363
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 353 WSLCSWTSCSVLLWLWGKTRYSSGISPLATICE 451
W L +W LLWLW R G PL + E
Sbjct: 9 WVLATWWG-EPLLWLWQPFRAGGGAGPLGHLLE 40
>11_01_0059 -
444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -3
Query: 772 PPTTPAVYQAARIRI----GPPRKQIGAMTAPIIPVCAIHANCLAPNPGVYSIPL 620
PP T + A +R+ G + A+T+ + + A+ +CL PNP +IP+
Sbjct: 806 PPLTVKLLHARLLRLDLLAGLSSLLLRALTSSALHLHALRVHCLLPNPSHLTIPI 860
>10_08_0333 - 16850267-16851802
Length = 511
Score = 29.1 bits (62), Expect = 4.1
Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Frame = -2
Query: 695 SSHNTSVRHPC*LFSPKSRCVLHSSYYHARTNHQT--QCDNNGHPSISCYQI*KCGCSEN 522
SS+ S P L + L+ SY H T Q PSI + CG N
Sbjct: 369 SSNEISGAIPPSLAGISTLSTLNLSYNHLSGKIPTGNQLQTFTDPSIYSHNSGLCGPPLN 428
Query: 521 SNCTTSSQHQRTRDVSICCFYTFFHILWPKVRFLKSTWF 405
+CT +S RD C F++ + V F WF
Sbjct: 429 ISCTNASVASDERDCRTCEDQYFYYCVMAGVVFGFWLWF 467
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 772 PPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVCAIHA 662
PP TPA A R+ PP + AP PV + A
Sbjct: 70 PPATPAGLSALRVHASPPPPPVKQHAAPPPPVMDVAA 106
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 290 SGETHGTCWTKCIQLGQGCISWSLCSWTSCSV 385
SG+ HG W + + G + +S + SCS+
Sbjct: 58 SGQGHGNSWIEVLSTGSSVVDFSSSAAESCSI 89
>07_01_0313 + 2216498-2216953
Length = 151
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = -3
Query: 709 IGAMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEPIIRPNVTIMDIHPFLA--TKFRSA 536
+ A+T P IP A+ L P P + ++P TMP P V + + P A T +
Sbjct: 58 VPAVTLPPIP--AVPKVTLPPMPAIPTVPAVTMPPMPAVPAVPAVTLPPMPAVPTVPPNT 115
Query: 535 GVLKTAT--ALPAVSTKEPAMYPYV 467
V+ A ALP V+ A P V
Sbjct: 116 VVVPAAVVPALPKVALPPMAAVPNV 140
>03_02_0578 + 9603118-9605633,9605766-9605781
Length = 843
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 387 YYGSGVKPGTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVF-RTPALLNLVARN 563
Y G L S L P K+R++ G G L GSA A+ R N++ +
Sbjct: 584 YMAKGTLRSHLYGSDLPPLPWKQRLEACIGAARGLHYLHTGSAKAIIHRDVKSANILLDD 643
Query: 564 GWMSIIVTLGL 596
G+M+ + GL
Sbjct: 644 GFMAKVADFGL 654
>01_01_0574 +
4263247-4263615,4263945-4263992,4264308-4264514,
4264670-4264826,4264958-4265041,4265785-4265909,
4268100-4268218,4268535-4268619,4269087-4269134
Length = 413
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 228 VVRNYAREPRTRVATRSQPTLRERLMA 308
V+RNY P R+ T++Q RER+++
Sbjct: 110 VLRNYVPSPSQRIRTQNQREYRERILS 136
>07_01_0979 - 8270980-8271654,8271984-8272088
Length = 259
Score = 28.3 bits (60), Expect = 7.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 692 SCHCSNLLPWWPNP 733
SCHC + WW NP
Sbjct: 245 SCHCQRVKHWWRNP 258
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/64 (18%), Positives = 27/64 (42%)
Frame = +3
Query: 399 GVKPGTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSI 578
GV T++ S W E ++ YG++ ++ + + V + + A W+++
Sbjct: 72 GVAKSTVEASQPWLAAAAELLQVIYGWLVAAIAVAVENLPGVAKNTVEYTVEASQPWLAV 131
Query: 579 IVTL 590
L
Sbjct: 132 AAKL 135
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -3
Query: 772 PPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVCAIHA---NCLAPNPGVYSIPLTTMPEP 602
PPT P V PR + + P+ P A+++ + P+P + S+ L ++P+P
Sbjct: 363 PPTHPEVNGFDEF---DPRGSVPDTSPPVNPSQAVNSLEMDLFGPDP-INSLALVSVPQP 418
Query: 601 IIRPNV 584
PNV
Sbjct: 419 TASPNV 424
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 27.9 bits (59), Expect = 9.5
Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 16/126 (12%)
Frame = -3
Query: 772 PPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEPIIR 593
PP P+ ++ PP P + L P PG +P TTM + R
Sbjct: 224 PPPPPSPHRHPAAHPPPPPHHPAPRPPPPMAAAPRQPAALPPVPGATVVPFTTMQAAVSR 283
Query: 592 PNVTIMDIHPF-------------LATKFRSAGVLKTATALPAVS---TKEPAMYPYVVF 461
+ + + F L K +S GV KT + A + T+ P +
Sbjct: 284 NMMESLSVPTFRVGYAVCTDKLDALCEKVKSKGVTKTLLLVKAAAMALTQHPVVNASCRD 343
Query: 460 IRSFTY 443
+SF+Y
Sbjct: 344 GKSFSY 349
>07_01_0310 + 2209084-2209554
Length = 156
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = -3
Query: 769 PTTPAVYQAARIRIGPPRKQIGAMTAPIIP-VCAIHANCLAPNPGVYSIPLTTMPEPIIR 593
P P V AA + P ++ P +P V + A L P P V ++P T+P
Sbjct: 48 PAVPTVPNAALPPM-PAVPKVALPPMPAVPAVPTVPAVALPPMPAVPAVPTATLPPMPAV 106
Query: 592 PNVTIMDIHPFLATKFRSAGVLKTATALPAVS 497
P V + P A + + + A+P V+
Sbjct: 107 PAVPNAVLPPIPAVPKVTLPPMPSIPAVPKVT 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,680,208
Number of Sequences: 37544
Number of extensions: 525601
Number of successful extensions: 1607
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1605
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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