Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11a13
(777 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021) 66 2e-11
SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 30 2.4
SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32) 29 5.5
SB_44384| Best HMM Match : Kazal_1 (HMM E-Value=1.4e-21) 29 5.5
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) 29 5.5
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73) 29 5.5
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0) 28 7.3
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 28 7.3
SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7) 28 7.3
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)
Length = 344
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Frame = +3
Query: 384 CYYGSGVKP--GTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVA 557
CYYG G+ G + S +WPQ V++RI TY Y AGSL +TAG+A ++ R+ A+ ++
Sbjct: 129 CYYGLGLSSEVGAIDRSVMWPQVVRDRIHATYAYFAGSLAVTAGAAYSISRSRAVYTMMR 188
Query: 558 RN------GWMSIIVTLGLMIGSGMVVRGMEYTPG 644
+ W+ I+ +++G +VVR T G
Sbjct: 189 ASPLLLTAHWVGTILAPIMLLGGPLVVRAAVVTAG 223
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +3
Query: 687 MGAVIAPICFLGGPILMRAAWYTAGVVGGL 776
+G ++API LGGP+++RAA TAGVVG L
Sbjct: 199 VGTILAPIMLLGGPLVVRAAVVTAGVVGAL 228
>SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 353 WSL-CSWTSCSVLLWLWGKTRYSSGISPLATICERTYKNNIWI 478
W++ C W + + W +GK ++P T+ E Y NNI I
Sbjct: 217 WNIDCQWIDVTDMAWKFGKFYLRIVVNPNRTVAETDYDNNIGI 259
>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 978
Score = 31.5 bits (68), Expect = 0.79
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = +2
Query: 29 SNDN-TNQDDNKLISNNSSCIKEKKFKSC*NKRIINYVITNVYRSLGVQCNAESKIASTT 205
SNDN T+ D + + +F + I+YV+ ++ + Q NAE ++A
Sbjct: 25 SNDNQTSSSDGETTVEPVPIFGDDEFYVREVEMDISYVVDDIQK----QANAEQQMADDV 80
Query: 206 KFCTEKLCGQKLCTRTSNKGRYTLTTHTSGETHGTCWTKCIQLGQ 340
C++K+ C++T + + L HT +G KC G+
Sbjct: 81 TACSKKIYQCDQCSKTFTR-PHDLRRHTKSIHNGEKPYKCEHCGR 124
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = -3
Query: 772 PPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEPII- 596
PP PA++ + PP IG +T P P+ + P + ++P ++P P I
Sbjct: 371 PPAMPAMFNP---HVPPP--MIGPVTVPPPPLIPPPQASIPPPTMIQTLPPPSVPPPPIG 425
Query: 595 ---RPNVTIMDIHPFLATKFRSAGVL 527
RP+V + +PF + + G +
Sbjct: 426 VPNRPSVLYPNNNPFQRSGYNGPGFM 451
>SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 770 TNYTSSVPSCTHQDWATKEANWSNDSSHNTSVRHPC 663
T Y SS+ C H W++ S D+ S R PC
Sbjct: 7 TGYESSIDECPHNGWSSHNCGHSEDAGVQCS-RVPC 41
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 692 SHNTSVRHPC*LFSPKSRCVLHSSYYHARTNHQTQCDN 579
SH+T V HP + P+ V H S Y +H Q D+
Sbjct: 1587 SHDTFVVHPSAAYEPRGSTVSHESNYIGIPSHVEQYDD 1624
>SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)
Length = 326
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 314 WTKCIQLGQGCI-SWS-LCSWTSCSVLLWLWGKTRYSSGISPL 436
W KC QL + C +W SW+SCSV L KTR +PL
Sbjct: 187 WGKC-QLQEHCPGNWGEWSSWSSCSVTCDLGTKTRTRKCDNPL 228
>SB_44384| Best HMM Match : Kazal_1 (HMM E-Value=1.4e-21)
Length = 85
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +2
Query: 677 HWYYGSCHCSNLLPWWPNPDACS 745
HW SC C P P PD C+
Sbjct: 19 HWETASCKCFTFSPPEPKPDKCA 41
>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
Length = 439
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -3
Query: 772 PPTTP-AVYQAARIRIGPPRKQIGAMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEPII 596
PPT P +V + + PP + + P A P P V P TT+P P++
Sbjct: 49 PPTNPPSVVEVTTTQAPPPPPVVTEAPTTVPPPVVTDAPTTVPPPVVTDAP-TTVPPPVV 107
>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
Length = 617
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -1
Query: 471 MLFLYVLSHIVAKGE-IPEEYLVLPQSHSSTEQLV 370
+L ++VLS++VA+GE E +L Q+HSS QL+
Sbjct: 155 LLSMHVLSNLVARGETYHEAEWILFQAHSSLIQLL 189
>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 636
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 135 MLSRMCIGRSAFN-VTQSLKSPVPQNFVPRNYVVRNYAREPRTRVATRSQPTLRE 296
M S C+G S + VT+++ P P + + + N +AT + P L+E
Sbjct: 574 MASPQCLGYSHYRTVTKTICLPSPDDIINQTLTAVNQIHAKAVYIATDNNPMLQE 628
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = -2
Query: 749 PSCTHQDW---ATKEANWSNDSSHNTSVRHPC*LFSPKSRCVLHSSYYHARTNHQTQCDN 579
P+ TH +W + ANW++ S + + RHP +P C H + A H +
Sbjct: 424 PTKTHANWNHPSKTWANWNHPSKNQANCRHP--TETPAYLC--HPNKTQANCGHPAKTQA 479
Query: 578 NG-HPS 564
N HP+
Sbjct: 480 NWYHPT 485
>SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)
Length = 167
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Frame = +2
Query: 311 CWTKC-IQLGQGC--ISWSLCS---WTSCSVLLW 394
CWTKC I G C + + C+ WT C+++ W
Sbjct: 98 CWTKCAIVHGTKCAIVHGTKCAIVCWTKCAIVCW 131
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 262 GSLHAHNPHFGRDSWHLLDQMHSAW 336
G H H P G+D H Q SAW
Sbjct: 407 GPYHQHPPRHGQDGGHPSQQPRSAW 431
>SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 772 PPTTPAVYQAARIRIGPPRKQIGAMTAPIIP 680
P + A Y A R GPP K + T P+IP
Sbjct: 180 PRSNSATYLRAHSRNGPPVKDRPSSTEPVIP 210
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,418,781
Number of Sequences: 59808
Number of extensions: 624626
Number of successful extensions: 1948
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1930
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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