Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a13
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical pr...   162   3e-40
Z81118-9|CAM84694.1|  208|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    31   0.92 
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.8  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.8  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U21323-2|AAM22051.1|  155|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical p...    28   6.5  
U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin ...    28   6.5  
AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical ...    28   6.5  

>U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical
           protein K11H12.8a protein.
          Length = 342

 Score =  162 bits (393), Expect = 3e-40
 Identities = 81/169 (47%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
 Frame = +3

Query: 273 RSQPTLRERLMAPAGPNAFXXXXXXXXXXXXXXXXXXCYYGSGVKPGT-LQESHLWPQYV 449
           R+ PTL+ERL+ P     F                   YYG   K  + LQ+S +WP YV
Sbjct: 50  RTGPTLKERLLGPTTGKPFVYGTYALAGASVFGVGALMYYGLVSKEQSILQKSAIWPSYV 109

Query: 450 KERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVTLGLMIGSGMVVRGM 629
           +ERI TTY Y+AGSL LTA S VA  R+ A++ L A  G MS+  T+  MI SGM+ R +
Sbjct: 110 RERISTTYAYLAGSLALTAVSGVAASRSAAIMRLTAGGGMMSLFGTMAAMIASGMLARSI 169

Query: 630 EYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPILMRAAWYTAGVVGGL 776
           +Y     AK LAW  H G++GAV AP+CF+ GP+L RAAWYTAG+VGGL
Sbjct: 170 DYESTV-AKHLAWALHCGVLGAVFAPLCFMAGPVLTRAAWYTAGIVGGL 217


>Z81118-9|CAM84694.1|  208|Caenorhabditis elegans Hypothetical
           protein T10G3.8 protein.
          Length = 208

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 207 NFVPRNYVVRNYAREPRTRVATRSQPTLRERLMAP 311
           + VP+N V +N + +PR RV TR  P+   +L  P
Sbjct: 119 SLVPKNEVKKNASPQPRVRVITRKSPSPLRKLSTP 153


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +2

Query: 95   KKFKSC*NKRIINYVITNVYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRT--SNKG- 265
            +  K C +   IN V  N+ ++L    N E   ++T  FC    CG   CT    S KG 
Sbjct: 1254 ESLKGCISSITINEVPINLQQALE-NVNTEQSCSATVNFCAGIDCGNGKCTNNALSPKGY 1312

Query: 266  RYTLTTHTSGE 298
                 +H SGE
Sbjct: 1313 MCQCDSHFSGE 1323


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +2

Query: 95   KKFKSC*NKRIINYVITNVYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRT--SNKG- 265
            +  K C +   IN V  N+ ++L    N E   ++T  FC    CG   CT    S KG 
Sbjct: 1254 ESLKGCISSITINEVPINLQQALE-NVNTEQSCSATVNFCAGIDCGNGKCTNNALSPKGY 1312

Query: 266  RYTLTTHTSGE 298
                 +H SGE
Sbjct: 1313 MCQCDSHFSGE 1323


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 575  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 468
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 575  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 468
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 575  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 468
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 575  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 468
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
 Frame = -3

Query: 772  PPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVC---------AIHANCLAPNPGVYSIPL 620
            P     V QA  + + PP       T PI+ V          A+ +    P+P   S P+
Sbjct: 2190 PTNQSPVTQAPPVTLPPPSVATAGPTGPILTVVPVSSAPTSGAVSSTTNTPSPTNQS-PV 2248

Query: 619  TTMPEPIIR--PNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYVVF 461
            T  P  +    P   I+ + P +++   S  V  TATA P ++T + +    V F
Sbjct: 2249 TLPPPSVATAGPTGPILTVVP-VSSAPTSGAVSSTATAAPVITTTKTSSVLSVSF 2302


>U21323-2|AAM22051.1|  155|Caenorhabditis elegans Hypothetical
           protein C45G9.6b protein.
          Length = 155

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 149 VYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRTSNKG 265
           V R  G  CN+ +   S   +CT  + G K+C  TSN G
Sbjct: 58  VQRDEGGYCNSNTDCRSGL-YCTASVNGVKICLSTSNGG 95


>U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical
           protein C45G9.6a protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 149 VYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRTSNKG 265
           V R  G  CN+ +   S   +CT  + G K+C  TSN G
Sbjct: 58  VQRDEGGYCNSNTDCRSGL-YCTASVNGVKICLSTSNGG 95


>U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical
           protein C18C4.9 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 467 CFYTFFHILWPKVRFLKSTWFYPR 396
           C + F H+  P++ F++ TW + R
Sbjct: 190 CIHQFLHLTQPQILFVRKTWNHAR 213


>U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin
           protein 6 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 365 SWTSCSVLLWLWGKTRYSSGISP 433
           SW S SVL WL G T   + ISP
Sbjct: 219 SWPSTSVLTWLDGSTSDYNNISP 241


>AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.10 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = +2

Query: 140 ITNVYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRTSNKGRYTLTTHTSGETHGTCWT 319
           +TN    L + CN          +C ++ CG+  C  T+  G  T+T+       GTC +
Sbjct: 163 VTNCGNDLSI-CNTVGMQTFVNTYC-QRTCGR--CPSTTASGSVTVTS-------GTCTS 211

Query: 320 KCIQLGQGCISWS 358
                   C +WS
Sbjct: 212 YIADSSSNCAAWS 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,291,609
Number of Sequences: 27780
Number of extensions: 453732
Number of successful extensions: 1365
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)