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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a13
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    28   6.0  
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    28   6.0  
At5g47850.1 68418.m05912 protein kinase, putative contains simil...    28   7.9  
At2g43740.1 68415.m05437 hypothetical protein weak similarity to...    28   7.9  
At2g34350.1 68415.m04204 nodulin-related weak similarity to nodu...    28   7.9  

>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 606 SGMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPIL 734
           SGMV +G ++ PG   +QL  M   G+MG++       G P L
Sbjct: 268 SGMV-QGSQFHPGSSGQQLQGMQAMGMMGSLNLTSQMRGNPAL 309


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 606 SGMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPIL 734
           SGMV +G ++ PG   +QL  M   G+MG++       G P L
Sbjct: 268 SGMV-QGSQFHPGSSGQQLQGMQAMGMMGSLNLTSQMRGNPAL 309


>At5g47850.1 68418.m05912 protein kinase, putative contains
           similarity to cytokinin-regulated kinase 1 [Nicotiana
           tabacum] gi|10998537|gb|AAG25966; contains protein
           kinase domain, Pfam:PF00069
          Length = 751

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 214 YRETMWSEIMHENLEQGSL--HAHNPHFGRDSW 306
           Y +T    +++E ++ GSL  H HNP F   SW
Sbjct: 518 YEDTEERILVYEYMKNGSLADHLHNPQFDPLSW 550


>At2g43740.1 68415.m05437 hypothetical protein weak similarity to
           RTM1 (GI:6503088) [Arabidopsis thaliana]
          Length = 309

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 640 GVYSIPLTTMPEPIIRPNVTIMDIHPFLATKFRSAGVLKT 521
           G+Y  P+T + +  +R N  + D +   +T ++S+G L T
Sbjct: 185 GIYVCPITRINDVALRTNYKVTDDYDDQSTFYQSSGPLTT 224


>At2g34350.1 68415.m04204 nodulin-related weak similarity to
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 525

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 390 YGSGVKPGTLQESHLWPQYVKERIKTTYGYIA-GSLVLTAGSAVAVFRTPALLNLVARNG 566
           +GSG    T   SH WP+ V   I  T G +A G +V+ +G   +++    L+ L   + 
Sbjct: 368 FGSGYISDTYLHSHGWPRPVFMAI--TLGLMAIGHIVMASGLLGSLYIGSLLVGLAYGSQ 425

Query: 567 WMSIIVTL 590
           W S++ T+
Sbjct: 426 W-SLMPTI 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,103,261
Number of Sequences: 28952
Number of extensions: 416925
Number of successful extensions: 1210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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