BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte11a13 (777 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 28 6.0 At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 28 6.0 At5g47850.1 68418.m05912 protein kinase, putative contains simil... 28 7.9 At2g43740.1 68415.m05437 hypothetical protein weak similarity to... 28 7.9 At2g34350.1 68415.m04204 nodulin-related weak similarity to nodu... 28 7.9 >At1g17440.2 68414.m02133 transcription initiation factor IID (TFIID) subunit A family protein similar to SP|Q16514 Transcription initiation factor TFIID 20/15 kDa subunits (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam profile PF03847: Transcription initiation factor TFIID subunit A Length = 683 Score = 28.3 bits (60), Expect = 6.0 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +3 Query: 606 SGMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPIL 734 SGMV +G ++ PG +QL M G+MG++ G P L Sbjct: 268 SGMV-QGSQFHPGSSGQQLQGMQAMGMMGSLNLTSQMRGNPAL 309 >At1g17440.1 68414.m02132 transcription initiation factor IID (TFIID) subunit A family protein similar to SP|Q16514 Transcription initiation factor TFIID 20/15 kDa subunits (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam profile PF03847: Transcription initiation factor TFIID subunit A Length = 683 Score = 28.3 bits (60), Expect = 6.0 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +3 Query: 606 SGMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPIL 734 SGMV +G ++ PG +QL M G+MG++ G P L Sbjct: 268 SGMV-QGSQFHPGSSGQQLQGMQAMGMMGSLNLTSQMRGNPAL 309 >At5g47850.1 68418.m05912 protein kinase, putative contains similarity to cytokinin-regulated kinase 1 [Nicotiana tabacum] gi|10998537|gb|AAG25966; contains protein kinase domain, Pfam:PF00069 Length = 751 Score = 27.9 bits (59), Expect = 7.9 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Frame = +1 Query: 214 YRETMWSEIMHENLEQGSL--HAHNPHFGRDSW 306 Y +T +++E ++ GSL H HNP F SW Sbjct: 518 YEDTEERILVYEYMKNGSLADHLHNPQFDPLSW 550 >At2g43740.1 68415.m05437 hypothetical protein weak similarity to RTM1 (GI:6503088) [Arabidopsis thaliana] Length = 309 Score = 27.9 bits (59), Expect = 7.9 Identities = 12/40 (30%), Positives = 23/40 (57%) Frame = -3 Query: 640 GVYSIPLTTMPEPIIRPNVTIMDIHPFLATKFRSAGVLKT 521 G+Y P+T + + +R N + D + +T ++S+G L T Sbjct: 185 GIYVCPITRINDVALRTNYKVTDDYDDQSTFYQSSGPLTT 224 >At2g34350.1 68415.m04204 nodulin-related weak similarity to nodule-specific protein Nlj70 [Lotus japonicus] GI:3329366 Length = 525 Score = 27.9 bits (59), Expect = 7.9 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +3 Query: 390 YGSGVKPGTLQESHLWPQYVKERIKTTYGYIA-GSLVLTAGSAVAVFRTPALLNLVARNG 566 +GSG T SH WP+ V I T G +A G +V+ +G +++ L+ L + Sbjct: 368 FGSGYISDTYLHSHGWPRPVFMAI--TLGLMAIGHIVMASGLLGSLYIGSLLVGLAYGSQ 425 Query: 567 WMSIIVTL 590 W S++ T+ Sbjct: 426 W-SLMPTI 432 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,103,261 Number of Sequences: 28952 Number of extensions: 416925 Number of successful extensions: 1210 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1162 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1206 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1736283200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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