Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a12
         (465 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42640.1 68416.m04431 ATPase, plasma membrane-type, putative ...    27   6.2  
At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative ...    27   6.2  

>At3g42640.1 68416.m04431 ATPase, plasma membrane-type, putative /
           proton pump, putative strong similarity to P-type
           H+-ATPase from [Lycopersicon esculentum] GI:1621440,
           [Solanum tuberosum] GI:435001, SP|Q03194 {Nicotiana
           plumbaginifolia}; contains InterPro accession IPR001757:
           ATPase, E1-E2 type
          Length = 948

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -2

Query: 314 GSVMTIAVELSKIRIYSKPTDVLDSWRLLEVYS 216
           G++MTI    SK R+  KP+ V DSW+L E+++
Sbjct: 688 GTIMTI----SKDRV--KPSPVPDSWKLNEIFA 714


>At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative /
           proton pump, putative similar to P-type
           H(+)-transporting ATPase from [Phaseolus vulgaris]
           GI:758250, [Lycopersicon esculentum] GI:1621440,
           SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
           tuberosum] GI:435001; contains InterPro accession
           IPR001757: ATPase, E1-E2 type
          Length = 949

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -2

Query: 314 GSVMTIAVELSKIRIYSKPTDVLDSWRLLEVYS 216
           G++MTI    SK R+  KP+ + DSW+L E+++
Sbjct: 687 GTIMTI----SKDRV--KPSPIPDSWKLKEIFA 713


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,713,561
Number of Sequences: 28952
Number of extensions: 120083
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)