Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11a11
(701 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82901-1|CAI42864.2| 1593|Homo sapiens THO complex 2 protein. 31 4.0
BC072400-1|AAH72400.1| 414|Homo sapiens THOC2 protein protein. 31 4.0
AL030996-5|CAI42273.1| 387|Homo sapiens THO complex 2 protein. 31 4.0
AL030996-3|CAI42271.2| 1593|Homo sapiens THO complex 2 protein. 31 4.0
AL023575-1|CAO03594.1| 1593|Homo sapiens THO complex 2 protein. 31 4.0
AF441770-1|AAM28436.1| 1478|Homo sapiens Tho2 protein. 31 4.0
BC067773-1|AAH67773.1| 434|Homo sapiens arginine/serine-rich co... 31 5.3
BC008684-1|AAH08684.2| 434|Homo sapiens arginine/serine-rich co... 31 5.3
AK023985-1|BAB14755.1| 202|Homo sapiens protein ( Homo sapiens ... 31 5.3
AB212664-1|BAE93762.1| 434|Homo sapiens hypothetical protein pr... 31 5.3
BX648654-1|CAE46196.1| 164|Homo sapiens hypothetical protein pr... 30 9.2
BC115006-1|AAI15007.1| 1437|Homo sapiens Wolf-Hirschhorn syndrom... 30 9.2
BC113469-1|AAI13470.1| 1437|Homo sapiens Wolf-Hirschhorn syndrom... 30 9.2
BC101717-1|AAI01718.1| 1437|Homo sapiens WHSC1L1 protein, isofor... 30 9.2
BC062631-1|AAH62631.1| 645|Homo sapiens Wolf-Hirschhorn syndrom... 30 9.2
BC012059-1|AAH12059.1| 645|Homo sapiens Wolf-Hirschhorn syndrom... 30 9.2
AK127594-1|BAC87049.1| 320|Homo sapiens protein ( Homo sapiens ... 30 9.2
AK022560-1|BAB14099.1| 645|Homo sapiens protein ( Homo sapiens ... 30 9.2
AJ295992-1|CAC28352.1| 645|Homo sapiens putative chromatin modu... 30 9.2
AJ295991-1|CAC28351.1| 1388|Homo sapiens Putative Chromatin modu... 30 9.2
AJ295990-1|CAC28350.1| 1437|Homo sapiens putative chromatin modu... 30 9.2
AF332469-1|AAK00355.1| 1437|Homo sapiens putative protein WHSC1L... 30 9.2
AF332468-1|AAK00354.1| 645|Homo sapiens putative protein WHSC1L... 30 9.2
AF255649-1|AAG44637.1| 561|Homo sapiens DC28 protein. 30 9.2
>Z82901-1|CAI42864.2| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 605 ARKEQEKREKARLEKQKQHTIPATTPEQR 691
A KE +K + EK+K+ PATTPE R
Sbjct: 1265 AVKENDKEKGKEKEKEKKEKTPATTPEAR 1293
>BC072400-1|AAH72400.1| 414|Homo sapiens THOC2 protein protein.
Length = 414
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 605 ARKEQEKREKARLEKQKQHTIPATTPEQR 691
A KE +K + EK+K+ PATTPE R
Sbjct: 86 AVKENDKEKGKEKEKEKKEKTPATTPEAR 114
>AL030996-5|CAI42273.1| 387|Homo sapiens THO complex 2 protein.
Length = 387
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 605 ARKEQEKREKARLEKQKQHTIPATTPEQR 691
A KE +K + EK+K+ PATTPE R
Sbjct: 32 AVKENDKEKGKEKEKEKKEKTPATTPEAR 60
>AL030996-3|CAI42271.2| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 605 ARKEQEKREKARLEKQKQHTIPATTPEQR 691
A KE +K + EK+K+ PATTPE R
Sbjct: 1265 AVKENDKEKGKEKEKEKKEKTPATTPEAR 1293
>AL023575-1|CAO03594.1| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 605 ARKEQEKREKARLEKQKQHTIPATTPEQR 691
A KE +K + EK+K+ PATTPE R
Sbjct: 1265 AVKENDKEKGKEKEKEKKEKTPATTPEAR 1293
>AF441770-1|AAM28436.1| 1478|Homo sapiens Tho2 protein.
Length = 1478
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 605 ARKEQEKREKARLEKQKQHTIPATTPEQR 691
A KE +K + EK+K+ PATTPE R
Sbjct: 1150 AVKENDKEKGKEKEKEKKEKTPATTPEAR 1178
>BC067773-1|AAH67773.1| 434|Homo sapiens arginine/serine-rich
coiled-coil 2 protein.
Length = 434
Score = 30.7 bits (66), Expect = 5.3
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 581 QEAFRQWL--ARKEQEKREKARLEKQKQHTIPA 673
QEA + L A+K QE+REK +EKQKQ I A
Sbjct: 236 QEALARRLERAKKLQEQREKEMVEKQKQQEIAA 268
>BC008684-1|AAH08684.2| 434|Homo sapiens arginine/serine-rich
coiled-coil 2 protein.
Length = 434
Score = 30.7 bits (66), Expect = 5.3
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 581 QEAFRQWL--ARKEQEKREKARLEKQKQHTIPA 673
QEA + L A+K QE+REK +EKQKQ I A
Sbjct: 236 QEALARRLERAKKLQEQREKEMVEKQKQQEIAA 268
>AK023985-1|BAB14755.1| 202|Homo sapiens protein ( Homo sapiens
cDNA FLJ13923 fis, clone Y79AA1000539. ).
Length = 202
Score = 30.7 bits (66), Expect = 5.3
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 581 QEAFRQWL--ARKEQEKREKARLEKQKQHTIPA 673
QEA + L A+K QE+REK +EKQKQ I A
Sbjct: 4 QEALARRLERAKKLQEQREKEMVEKQKQQEIAA 36
>AB212664-1|BAE93762.1| 434|Homo sapiens hypothetical protein
protein.
Length = 434
Score = 30.7 bits (66), Expect = 5.3
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 581 QEAFRQWL--ARKEQEKREKARLEKQKQHTIPA 673
QEA + L A+K QE+REK +EKQKQ I A
Sbjct: 236 QEALARRLERAKKLQEQREKEMVEKQKQQEIAA 268
>BX648654-1|CAE46196.1| 164|Homo sapiens hypothetical protein
protein.
Length = 164
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 611 KEQEKREKARLEKQKQHTIPATTPEQR 691
KE +K + EK+K+ PATTPE R
Sbjct: 2 KENDKEKGKGKEKEKKEKTPATTPEAR 28
>BC115006-1|AAI15007.1| 1437|Homo sapiens Wolf-Hirschhorn syndrome
candidate 1-like 1 protein.
Length = 1437
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 197 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 224
>BC113469-1|AAI13470.1| 1437|Homo sapiens Wolf-Hirschhorn syndrome
candidate 1-like 1 protein.
Length = 1437
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 197 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 224
>BC101717-1|AAI01718.1| 1437|Homo sapiens WHSC1L1 protein, isoform
long protein.
Length = 1437
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 197 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 224
>BC062631-1|AAH62631.1| 645|Homo sapiens Wolf-Hirschhorn syndrome
candidate 1-like 1 protein.
Length = 645
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 197 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 224
>BC012059-1|AAH12059.1| 645|Homo sapiens Wolf-Hirschhorn syndrome
candidate 1-like 1 protein.
Length = 645
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 197 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 224
>AK127594-1|BAC87049.1| 320|Homo sapiens protein ( Homo sapiens
cDNA FLJ45689 fis, clone FCBBF3024911, highly similar
to Homo sapiens Wolf-Hirschhorn syndrome candidate
1-like 1 (WHSC1L1). ).
Length = 320
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 134 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 161
>AK022560-1|BAB14099.1| 645|Homo sapiens protein ( Homo sapiens
cDNA FLJ12498 fis, clone NT2RM2001668, weakly similar to
Homo sapiens putative WHSC1 protein (WHSC1) mRNA,
alternative ).
Length = 645
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 197 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 224
>AJ295992-1|CAC28352.1| 645|Homo sapiens putative chromatin
modulator protein.
Length = 645
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 197 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 224
>AJ295991-1|CAC28351.1| 1388|Homo sapiens Putative Chromatin
modulator protein.
Length = 1388
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 197 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 224
>AJ295990-1|CAC28350.1| 1437|Homo sapiens putative chromatin
modulator protein.
Length = 1437
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 197 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 224
>AF332469-1|AAK00355.1| 1437|Homo sapiens putative protein WHSC1L1l
protein.
Length = 1437
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 197 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 224
>AF332468-1|AAK00354.1| 645|Homo sapiens putative protein WHSC1L1s
protein.
Length = 645
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 197 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 224
>AF255649-1|AAG44637.1| 561|Homo sapiens DC28 protein.
Length = 561
Score = 29.9 bits (64), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 608 RKEQEKREKARLEKQKQHTIPATTPEQR 691
RK+ K + +R E++K H IP PE++
Sbjct: 166 RKKSNKHDSSRSEERKSHKIPKLEPEEQ 193
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,214,928
Number of Sequences: 237096
Number of extensions: 1857071
Number of successful extensions: 5279
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5257
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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