Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a09
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   2.4  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    24   5.5  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    24   5.5  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    24   5.5  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    23   7.3  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    23   7.3  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    23   9.6  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    23   9.6  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    23   9.6  

>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 20  KMCASVEGVCWSLY 61
           ++C+S++ +CW LY
Sbjct: 234 RLCSSLKRICWELY 247


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 276 YIADSFNTFTPLYNFYLYIFY 214
           Y+  SFN F PL N  + + Y
Sbjct: 124 YLGGSFNAFPPLQNDRITVVY 144


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 285 HYNYIADSFNTFTPLYN 235
           +YNY   SF  F P+YN
Sbjct: 456 NYNYPQPSFPPFHPIYN 472


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -3

Query: 261 FNTFTPLYNFYLYIFYKTITCFSCRV*MRSNDIFLREYNDLFFKHLK-IILIFEI*SSVK 85
           F ++T  +   LY+   +   F     M   +  LR Y D F +HLK ++      +S +
Sbjct: 713 FASYTSTFTRSLYLLENSEESFD-EGRMDKMEEILRRYEDSFSRHLKSLVNACNYFASTE 771

Query: 84  CCLPLHLIYKL 52
               L L+ KL
Sbjct: 772 TAALLSLVMKL 782


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 166 VITSHLDTA*KTCNSFIKNIKIKIV*WC 249
           VI   +  A KTC +F+K  K+K   +C
Sbjct: 13  VIDLFVKEAPKTCENFLKLCKLKYYNFC 40


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 170 MTFSYENTMICFLNI*KSF*YSKSNQVSSVAC 75
           ++FS  N  + F N    F Y K ++ S + C
Sbjct: 595 LSFSKLNDFVVFFNNYSRFEYEKESKRSDIVC 626


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 119 IFKCLKNRSLYSRKKMSLLLI 181
           IFK +K   +YS+K   LLLI
Sbjct: 92  IFKNIKEDLMYSKKLQVLLLI 112


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 6   IESKEKCVQVLRGCVG 53
           I  KE C+ V  GC G
Sbjct: 106 IAEKENCIAVSHGCTG 121


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 294 FLLHYNYIADSFNTFTP 244
           F + YNYI DS+    P
Sbjct: 462 FFVSYNYIIDSYQHMAP 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,587
Number of Sequences: 5004
Number of extensions: 20751
Number of successful extensions: 47
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)