Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a09
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03020.1 68417.m00410 transducin family protein / WD-40 repea...    26   4.1  
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ...    26   5.4  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    26   5.4  
At5g13290.2 68418.m01527 protein kinase family protein contains ...    25   9.4  
At5g13290.1 68418.m01526 protein kinase family protein contains ...    25   9.4  

>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to L. erythrorhizon LEC14B, GenBank accession
           number Q40153
          Length = 493

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 130 TFKNHSNIRNLIKCQVLPA 74
           T+K HS +R LI+C   PA
Sbjct: 390 TYKGHSVLRTLIRCYFSPA 408


>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
           SP|Q42510 Pattern formation protein EMB30 (GNOM)
           {Arabidopsis thaliana}; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1375

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 27  VQVLRGCVGV-CILNVMAGNT*HLIRFRILE*FLNV*KTDHC 149
           V+  R  +G+ C+LN   G    +IR  + E +L+  +TDHC
Sbjct: 6   VRAKRKELGISCMLNTEVGAVLAVIRRPLSESYLSPQETDHC 47


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 23  MCASVEGVCWSLYIKC 70
           +C + +G CW  +IKC
Sbjct: 487 LCNACQGTCWQPHIKC 502


>At5g13290.2 68418.m01527 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 331

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 264 SFNTFTPLYNFYLYIFYKTITCFSCR 187
           S NT + L  F+L  F +T T  SCR
Sbjct: 12  SSNTISLLLLFFLVFFSRTSTSTSCR 37


>At5g13290.1 68418.m01526 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 376

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 264 SFNTFTPLYNFYLYIFYKTITCFSCR 187
           S NT + L  F+L  F +T T  SCR
Sbjct: 12  SSNTISLLLLFFLVFFSRTSTSTSCR 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,656,400
Number of Sequences: 28952
Number of extensions: 95981
Number of successful extensions: 217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)