Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a06
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.40 
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    28   1.2  
SPBC1709.09 |||mitochondrial translation termination factor|Schi...    27   2.8  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   2.8  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   3.7  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   4.9  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.5  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    25   8.6  

>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 122 ENIEICEQDNRVFDVTQAQ-ELINKLEDYKCSSVDLEKQLLELETE 256
           +N E   + ++  + T  Q ELIN LE  K S + LEKQLLE   E
Sbjct: 285 QNKEQSSEGSKTANQTHEQKELINSLEK-KVSDIALEKQLLEEAVE 329


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 188 NKLEDYKCSSVDLEKQLLELETEVRHIQVEMESVK 292
           NKL+  K SS  LE+Q+  + +E+   + E+ES++
Sbjct: 859 NKLQIIKSSSSGLEEQMQRINSEISDKRNELESLE 893


>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 343 FKASILSAPAATRSGGTLHGLHFDLDVPH 257
           F  SILS   A  +GG LH    D DV H
Sbjct: 17  FHTSILSPRCAFHNGGILHKKAKDKDVKH 45


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +2

Query: 98  QDNRCENHENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRH 265
           +++   + EN++  E+D+   DVT A  L NK  DY   SV  + + L  ++++++
Sbjct: 340 EESEFMDSENVDD-EEDDDFLDVTTATSLQNKSTDY--GSVKRKTENLNSDSDIQN 392


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 176 QELINKLEDYKCSSVDLEKQLLELETEVR-HIQVEMESVK 292
           ++L N LE Y+     L+ QL+ LE ++R  ++ E+ESVK
Sbjct: 17  RQLGNLLEQYEVEIARLKSQLV-LEKKLRIQVEKELESVK 55


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -3

Query: 389 RTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASRDQQTN 210
           R L +S  +++       KY     RD+L+  +          AP S TP   S D+  N
Sbjct: 42  RQLPSSTSKDEDSEEASHKYDFEIDRDSLKSDSGSPRLHQNATAPTSSTP-LQSPDESVN 100


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 152 DYPVRKFLYFHDFRICCPGLQRRRHPYFVHFFYNY 48
           +YP ++F   H  R     LQ  +H YF+HF  +Y
Sbjct: 601 NYPTQEF---HLLRPTIKILQISKHEYFLHFSSSY 632


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 113 ENHENIEICEQDNRVF-DVTQAQELINKLEDYKCSSVDLEKQLLELETE 256
           ++ +N    ++D +V+ DV  A++L  + +        LEKQLLE +++
Sbjct: 502 QSEDNFGARDEDWKVYHDVLTAEQLEEERKKLLDQIYSLEKQLLEYDSQ 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,427
Number of Sequences: 5004
Number of extensions: 27956
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)