Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a06
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               30   1.7  
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               30   1.7  
SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)                 30   1.7  
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   28   5.1  
SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)               28   5.1  
SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   5.1  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    28   5.1  
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        28   6.7  
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)             28   6.7  
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   6.7  
SB_54983| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_54268| Best HMM Match : Vicilin_N (HMM E-Value=0.077)               27   8.9  

>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 267

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -3

Query: 422 GCTWRD-TADTRRTLSTSAEQ-EDLRRVVQSKYSVRPRRDTLRRHTSRTP-FRPGCAAPR 252
           G  WR  T + ++     A+   +L  +    Y  RPRR   +R  SRT  +   C +P 
Sbjct: 42  GTEWRKLTVEEKQKFFAEAKLLNELHMIEHPDYKYRPRRRVKKRSLSRTTGYSCYCHSPG 101

Query: 251 SLTPEAASRDQQT 213
               E A +D+++
Sbjct: 102 EEEKETARQDRES 114


>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 494

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -3

Query: 422 GCTWRD-TADTRRTLSTSAEQ-EDLRRVVQSKYSVRPRRDTLRRHTSRTP-FRPGCAAPR 252
           G  WR  T + ++     A+   +L  +    Y  RPRR   +R  SRT  +   C +P 
Sbjct: 42  GTEWRKLTVEEKQKFFAEAKLLNELHMIEHPDYKYRPRRRVKKRSLSRTTGYSCYCHSPG 101

Query: 251 SLTPEAASRDQQT 213
               E A +D+++
Sbjct: 102 EEEKETARQDRES 114


>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
          Length = 1382

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = -3

Query: 413 WRDTADTRRTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEA 234
           WRD A T R    + ++ED   V   K S+RP    LR   S      G +   +     
Sbjct: 677 WRDIALTMRDREYAQDEEDQIDVFDVKKSLRPVLKALRSR-SLLQISEGTSEEPTEAKSM 735

Query: 233 ASRDQQTNICS 201
           A +D++T+  S
Sbjct: 736 ADKDKETSASS 746


>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 443 LGSAARSGCTW--RDTADTRRTLSTSAEQEDLRRVVQSKYSVRPRR 312
           +G+  RS  T   +D A TR+TLS     +   R+VQ K S R ++
Sbjct: 267 IGAPYRSAATKLAKDAAVTRKTLSLQGNTQRQERLVQEKTSPRQQK 312


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 208 FVVF*FIN*FLSLCYIKYSIILFANFYIFMIFASVV 101
           FVVF F+  F+ + +  + I +F  F++F++FA  V
Sbjct: 696 FVVFAFVV-FIFIFFFAFVIFVFNAFFVFVVFAFFV 730


>SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -3

Query: 467 QAFVLLSRLGSAARSGCTWRDTADTRRTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTS 288
           Q  V   R  +  R   T R    TRR ++T  +    R+V+  ++   PR+ T +RH +
Sbjct: 417 QRHVTTQRHVTTQRQVTTQRHVT-TRRQVTTQRQVTTQRQVITQRHVTTPRKVTTQRHVT 475


>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
          Length = 310

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +2

Query: 104 NRCENHENIEICE-QDNRVFDVTQAQELINKLEDYKCSSV---DLEKQLLELETEVRHIQ 271
           NRC+   ++ IC+ Q  +       Q  +N+L  + C +     +EKQ  + +TE+R ++
Sbjct: 123 NRCDLDTHLIICDFQTAKCTRGCGLQVNMNELAQHNCINELRGSMEKQKSDFQTELRDMK 182

Query: 272 VEME 283
            +ME
Sbjct: 183 RDME 186


>SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 757

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 420 LHVAGHGGHTPHALDIGGTGGPPAGCSK 337
           LH+  H G TPH  DI G G    G  K
Sbjct: 655 LHMKRHAGDTPHKCDICGKGFVNKGALK 682


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
 Frame = +2

Query: 92   VVQDNRCENHENIEICEQDNRVFDVTQAQELIN----KLEDYKCSSVDLEKQLLELETEV 259
            V +DNR E   N E+ E++ R+ ++ +  ++      ++  Y+   V++EK+  ELET+ 
Sbjct: 3429 VEEDNRVEPLIN-ELTEKEQRIQEIERELKVYETKHTEIRVYEEKYVEIEKRYYELETKY 3487

Query: 260  RHIQVEME 283
              +  EM+
Sbjct: 3488 YTVIQEMK 3495


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +2

Query: 122 ENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMESVK 292
           E+ E+  ++N+ F +   +    KLE+YK  S  +EK  + L+ +++ +  E+  +K
Sbjct: 327 EDKELLAEENKCFGLETLKLRKEKLEEYKLFS-KIEKNNVRLKEDLKMVCHELNKLK 382


>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
          Length = 492

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 149 YPVRKFLYFHDFRICCPGLQRRRHPYFVHFFYNYFKI 39
           YPV   ++   F +C PG+ R  +P F   F   F +
Sbjct: 203 YPVFFAMFTRCFSLCFPGVYRYDYPVFFAIFTRCFSL 239


>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 1997

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 179  ELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMES 286
            EL  KLED       L K++ ELE  V  ++ E+E+
Sbjct: 1080 ELSGKLEDSNNLVESLRKRIRELEARVEELEEELEA 1115


>SB_54983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 404 TADTRRTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASR 225
           T+  +     S + +  R   Q K   RPR+   +  TS+T  +   A PR  +P+   +
Sbjct: 31  TSKPQAARQASRKTKTSRTQDQDKQDARPRQARRKTKTSKT--QDQAAKPRQASPKTKPQ 88

Query: 224 DQ 219
           DQ
Sbjct: 89  DQ 90


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +2

Query: 119  HENIEI-CEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMES 286
            +E++++ CEQ +   D  + QEL++K  + +    D E Q LEL+ +V+    E+ S
Sbjct: 1271 NEDLDVLCEQRSGEIDALR-QELVDKTNEVEHLRNDFENQTLELK-DVQQRSSELSS 1325


>SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 149 NRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMESVK 292
           NR       QEL   +E+YK  +  L+K   +++  V+ +Q+E+  +K
Sbjct: 279 NREKKKQYVQELEGSVEEYKSKNAVLQKDCEDMKGLVKDLQMEIAYLK 326


>SB_54268| Best HMM Match : Vicilin_N (HMM E-Value=0.077)
          Length = 371

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = +2

Query: 89  VVVQDNRCENHENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLE----KQLLELETE 256
           V+ + N  E   N ++ +  +++F V   QEL +++      S DL+    +Q++ L+T+
Sbjct: 117 VIREKNAVEMQLNQQLSQCSHKLFSVIGVQELQDRISTSDSVSDDLQDVFGRQIIALQTQ 176

Query: 257 VRHIQVEMESVK 292
              +  ++E  K
Sbjct: 177 RDDLMRQLEQQK 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,541,798
Number of Sequences: 59808
Number of extensions: 234383
Number of successful extensions: 688
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)