Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a06
         (607 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321364-1|AAP84718.1| 3241|Drosophila melanogaster PHD zinc fin...    33   0.40 
AE014296-31|AAS64921.1| 3241|Drosophila melanogaster CG7036-PB, ...    33   0.40 
AE014296-30|AAF47343.1| 3201|Drosophila melanogaster CG7036-PA, ...    33   0.40 
X58188-1|CAA41171.1|  208|Drosophila melanogaster troponin-I win...    29   3.7  
AE014298-2673|AAF48803.2|  208|Drosophila melanogaster CG7178-PA...    29   3.7  

>AY321364-1|AAP84718.1| 3241|Drosophila melanogaster PHD zinc finger
            protein rhinoceros protein.
          Length = 3241

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = -3

Query: 452  LSRLGSAARSGCTWRDTADTRRTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFR 273
            L+  GSA          +D+  + S   + ++ +  V+S  S    + T+R   +   F 
Sbjct: 1025 LATTGSAIGRNLGQHIYSDSESSSSEQEKDQEEQATVESNVSDSQNQQTIRTKAAMKEFV 1084

Query: 272  PGCAAPRSLTPEAAS 228
            PG AA  S T +AAS
Sbjct: 1085 PGTAATTSSTSQAAS 1099


>AE014296-31|AAS64921.1| 3241|Drosophila melanogaster CG7036-PB,
            isoform B protein.
          Length = 3241

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = -3

Query: 452  LSRLGSAARSGCTWRDTADTRRTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFR 273
            L+  GSA          +D+  + S   + ++ +  V+S  S    + T+R   +   F 
Sbjct: 1025 LATTGSAIGRNLGQHIYSDSESSSSEQEKDQEEQATVESNVSDSQNQQTIRTKAAMKEFV 1084

Query: 272  PGCAAPRSLTPEAAS 228
            PG AA  S T +AAS
Sbjct: 1085 PGTAATTSSTSQAAS 1099


>AE014296-30|AAF47343.1| 3201|Drosophila melanogaster CG7036-PA,
            isoform A protein.
          Length = 3201

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = -3

Query: 452  LSRLGSAARSGCTWRDTADTRRTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFR 273
            L+  GSA          +D+  + S   + ++ +  V+S  S    + T+R   +   F 
Sbjct: 985  LATTGSAIGRNLGQHIYSDSESSSSEQEKDQEEQATVESNVSDSQNQQTIRTKAAMKEFV 1044

Query: 272  PGCAAPRSLTPEAAS 228
            PG AA  S T +AAS
Sbjct: 1045 PGTAATTSSTSQAAS 1059


>X58188-1|CAA41171.1|  208|Drosophila melanogaster troponin-I
           wings-up A protein.
          Length = 208

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 101 DNRCENHENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEM 280
           + RC +  N+    +D     + Q  + INKLED K    DLE  +   + E+  +  ++
Sbjct: 75  EERCGSPRNLSDASEDTLKSLIKQHYDRINKLEDQK---YDLEYVVKRKDVEINDLNAQV 131

Query: 281 ESVK 292
             ++
Sbjct: 132 NDLR 135


>AE014298-2673|AAF48803.2|  208|Drosophila melanogaster CG7178-PA,
           isoform A protein.
          Length = 208

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 101 DNRCENHENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEM 280
           + RC +  N+    +D     + Q  + INKLED K    DLE  +   + E+  +  ++
Sbjct: 75  EERCGSPRNLSDASEDTLKSLIKQHYDRINKLEDQK---YDLEYVVKRKDVEINDLNAQV 131

Query: 281 ESVK 292
             ++
Sbjct: 132 NDLR 135


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,328,503
Number of Sequences: 53049
Number of extensions: 352108
Number of successful extensions: 1633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2482967880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)