Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a06
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-4|CAB55095.3|  222|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    29   2.6  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    29   2.6  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    29   2.6  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    29   2.6  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    29   2.6  
Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z74043-5|CAA98544.1|  588|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z35597-4|CAA84647.2|  548|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AL117202-4|CAB55095.3|  222|Caenorhabditis elegans Hypothetical
           protein Y47D3A.5 protein.
          Length = 222

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = -3

Query: 428 RSGCTWRDTADTRRTLST---SAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAA 258
           +SG T+ D AD R  L     S   + +R   +  +  RPRR        RTP R     
Sbjct: 27  KSGATYVDLADVRSQLPPPPPSVGPKGVRLAPKKPHQHRPRRQFRSVRLPRTPSRNSPLT 86

Query: 257 PRSLTP 240
           P + TP
Sbjct: 87  PPTKTP 92


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 161 DVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMES 286
           D T+ +EL   L+D K    +L  ++LEL++E+  ++ +  S
Sbjct: 425 DTTELEELQKTLDDLKIDCCNLTSKMLELQSELVEVKEKATS 466


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
           protein T28C6.9 protein.
          Length = 1861

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 140 EQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMESV 289
           EQ     D  + +E   K+ED +    DLE +L E E +++ +QV +E +
Sbjct: 524 EQATTAHDA-EIREFSIKMEDARRDIADLEAKLQEAEEKLKTVQVPVEMI 572


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 158 FDVTQAQELINKLEDYKCSSVDLEK 232
           FDV  A+E+I+ + D  C+ VDL+K
Sbjct: 683 FDVPTAKEIIHLVSDTVCAKVDLKK 707


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 98  QDNRCENHENIEICEQDNRVFDVTQAQ-ELINKLE-DYKCSSVDLEKQLLELETEVRHIQ 271
           Q+ R   H    I EQ     D   AQ EL++K   D K    D+EK++LE+E++ R  +
Sbjct: 566 QEARQSRHNLAAIAEQP---IDWKYAQQELLDKQGIDLKA---DMEKKMLEMESQYRREK 619

Query: 272 VEME 283
           VE+E
Sbjct: 620 VELE 623


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 98  QDNRCENHENIEICEQDNRVFDVTQAQ-ELINKLE-DYKCSSVDLEKQLLELETEVRHIQ 271
           Q+ R   H    I EQ     D   AQ EL++K   D K    D+EK++LE+E++ R  +
Sbjct: 566 QEARQSRHNLAAIAEQP---IDWKYAQQELLDKQGIDLKA---DMEKKMLEMESQYRREK 619

Query: 272 VEME 283
           VE+E
Sbjct: 620 VELE 623


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 98  QDNRCENHENIEICEQDNRVFDVTQAQ-ELINKLE-DYKCSSVDLEKQLLELETEVRHIQ 271
           Q+ R   H    I EQ     D   AQ EL++K   D K    D+EK++LE+E++ R  +
Sbjct: 566 QEARQSRHNLAAIAEQP---IDWKYAQQELLDKQGIDLKA---DMEKKMLEMESQYRREK 619

Query: 272 VEME 283
           VE+E
Sbjct: 620 VELE 623


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 158 FDVTQAQELINKLEDYKCSSVDLEK 232
           FDV  A+E+I+ + D  C+ VDL+K
Sbjct: 683 FDVPTAKEIIHLVSDTVCAKVDLKK 707


>Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -3

Query: 383 LSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASRDQQ 216
           +S   + + LR+ + S   +R R DT RR      F P    PR  + ++  RD Q
Sbjct: 234 MSKYQKNQSLRQFLNSPVRLRKRGDTSRRDAVEAGFEPRDTVPRCHSTQSL-RDVQ 288


>Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -3

Query: 383 LSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASRDQQ 216
           +S   + + LR+ + S   +R R DT RR      F P    PR  + ++  RD Q
Sbjct: 234 MSKYQKNQSLRQFLNSPVRLRKRGDTSRRDAVEAGFEPRDTVPRCHSTQSL-RDVQ 288


>Z74043-5|CAA98544.1|  588|Caenorhabditis elegans Hypothetical
           protein T19B10.9 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 80  DAGVVVQDNRCENHENIEICEQDNRVFDVTQAQELINK 193
           D  V+V DN        ++CE DN+  D TQ ++++++
Sbjct: 314 DPAVIVYDNI---EYKADLCEWDNKKEDATQTEDIVDE 348


>Z35597-4|CAA84647.2|  548|Caenorhabditis elegans Hypothetical
           protein C36E8.4 protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 179 ELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMESVK 292
           ++I   +DY   +VDLEKQ    E  +R     MESV+
Sbjct: 212 QMIRSEDDYVWQTVDLEKQRRMTENVLRKGVESMESVE 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,686,468
Number of Sequences: 27780
Number of extensions: 173535
Number of successful extensions: 727
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)