Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a06
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 86  RRHPYFVHFFYNYFKIMY 33
           RR+P+FV F+ ++F+  Y
Sbjct: 421 RRNPWFVEFWEHHFQCRY 438


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 107 CCPGLQRRRH 78
           CCPG  RRR+
Sbjct: 408 CCPGRVRRRY 417


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -3

Query: 329 SVRPRRDTLRRHTSRTPFRPGCAAPRSL 246
           ++RP  +++ R +S +PF      P  +
Sbjct: 551 TLRPGSNSIERQSSESPFTTSTIMPSDI 578


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -3

Query: 329 SVRPRRDTLRRHTSRTPFRPGCAAPRSL 246
           ++RP  +++ R +S +PF      P  +
Sbjct: 551 TLRPGSNSIERQSSESPFTTSTIMPSDI 578


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,058
Number of Sequences: 438
Number of extensions: 1854
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)