Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11a06
(607 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68910.1 68414.m07886 expressed protein similar to Myosin hea... 32 0.34
At2g01750.1 68415.m00104 expressed protein 29 2.4
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 29 3.2
At1g14840.1 68414.m01775 expressed protein 29 3.2
At5g60300.2 68418.m07558 lectin protein kinase family protein co... 28 4.2
At5g60300.1 68418.m07557 lectin protein kinase family protein co... 28 4.2
At5g40740.1 68418.m04944 expressed protein 28 5.5
At3g58360.1 68416.m06505 meprin and TRAF homology domain-contain... 28 5.5
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 27 7.3
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 27 7.3
At5g53120.3 68418.m06603 spermidine synthase, putative / putresc... 27 7.3
At5g53120.2 68418.m06602 spermidine synthase, putative / putresc... 27 7.3
At5g53120.1 68418.m06601 spermidine synthase, putative / putresc... 27 7.3
At3g45330.1 68416.m04894 lectin protein kinase family protein co... 27 7.3
At3g42580.1 68416.m04420 Ulp1 protease family protein contains P... 27 7.3
At3g45430.1 68416.m04904 lectin protein kinase family protein co... 27 9.6
At1g70310.1 68414.m08089 spermidine synthase 2 (SPDSYN2) / putre... 27 9.6
>At1g68910.1 68414.m07886 expressed protein similar to Myosin heavy
chain, nonmuscle type B (Cellular myosin heavy chain,
type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B)
(Swiss-Prot:Q27991) [Bos taurus]; contains 1
transmembrane domain
Length = 627
Score = 31.9 bits (69), Expect = 0.34
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +2
Query: 101 DNRCENHENIEICEQDNRVFDVTQAQELINKLEDYKCSSVD-LEKQLLELETEVRHIQVE 277
++R E+ E +I E D ++T+ + +D K V+ LEKQ+ ELE +V++ +V
Sbjct: 363 ESRAESGE-AKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQNSKVS 421
Query: 278 MES 286
E+
Sbjct: 422 SEA 424
>At2g01750.1 68415.m00104 expressed protein
Length = 629
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +2
Query: 95 VQDNRCENHENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLL 241
+Q+ E + IEIC+++NR+ D Q+ + ++E + + +LE+ +L
Sbjct: 237 LQNKNQELMKQIEICQEENRILDKLHRQK-VAEVEKFTQTVRELEEAVL 284
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 179 ELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMES 286
+L ++ E K +V LEK+L+EL + ++ E+ES
Sbjct: 492 DLESQSESLKSENVKLEKELVELRKAMEALKTELES 527
>At1g14840.1 68414.m01775 expressed protein
Length = 604
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 95 VQDNRCENHENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLL 241
+Q+ E + IEIC+++NR+ D Q+ + ++E S +LE+ +L
Sbjct: 213 LQNKNQELMKQIEICQEENRIIDKMHRQK-VAEVEKLMQSVRELEEAVL 260
>At5g60300.2 68418.m07558 lectin protein kinase family protein
contains Pfam domains, PF00069: Protein kinase domain
and PF00139: Legume lectins beta domain
Length = 718
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/43 (23%), Positives = 17/43 (39%)
Frame = -2
Query: 594 WVSRCWHRXXXXXXXXXXXXXXSIAHSVTLVLKFSSVCRSCIP 466
WV CW + +A V +V+K +C + +P
Sbjct: 557 WVCECWKKDSLLDATDPRLGGKFVAEEVEMVMKLGLLCSNIVP 599
>At5g60300.1 68418.m07557 lectin protein kinase family protein
contains Pfam domains, PF00069: Protein kinase domain
and PF00139: Legume lectins beta domain
Length = 718
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/43 (23%), Positives = 17/43 (39%)
Frame = -2
Query: 594 WVSRCWHRXXXXXXXXXXXXXXSIAHSVTLVLKFSSVCRSCIP 466
WV CW + +A V +V+K +C + +P
Sbjct: 557 WVCECWKKDSLLDATDPRLGGKFVAEEVEMVMKLGLLCSNIVP 599
>At5g40740.1 68418.m04944 expressed protein
Length = 741
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 374 SAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPR 252
SA+ D R+VVQ+ S + L R SR C PR
Sbjct: 83 SAQSRDFRKVVQAIISELESQGALPRSNSRVSSLATCCGPR 123
>At3g58360.1 68416.m06505 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 298
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 128 IEICEQDNRV-FDVTQAQELINKLEDYKCSSVDLEKQLLELETEV 259
+EI E+ N+ T+ QE+ +LE K +DLE QL + + EV
Sbjct: 241 VEISEKKNKEEAGETRMQEINEELESLKQKCLDLEAQLEKEKAEV 285
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -3
Query: 410 RDTADTRRTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFR--PGCAAPRSLTP- 240
+D RRT S SA ++ RR V+ +Y R + R S +P R P ++P+ +P
Sbjct: 176 KDRDHRRRTRSRSASPDEKRR-VRGRYDNESRSHS--RSLSASPARRSPRSSSPQKTSPA 232
Query: 239 EAASRDQQTN 210
S D+++N
Sbjct: 233 REVSPDKRSN 242
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -3
Query: 410 RDTADTRRTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFR--PGCAAPRSLTP- 240
+D RRT S SA ++ RR V+ +Y R + R S +P R P ++P+ +P
Sbjct: 176 KDRDHRRRTRSRSASPDEKRR-VRGRYDNESRSHS--RSLSASPARRSPRSSSPQKTSPA 232
Query: 239 EAASRDQQTN 210
S D+++N
Sbjct: 233 REVSPDKRSN 242
>At5g53120.3 68418.m06603 spermidine synthase, putative / putrescine
aminopropyltransferase, putative similar to SP|O82147
Spermidine synthase (EC 2.5.1.16) (Putrescine
aminopropyltransferase) (SPDSY) {Coffea arabica};
contains Pfam profile PF01564: Spermine/spermidine
synthase
Length = 359
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 80 DAGVVVQDNRCENHENIEICEQDNRVFDVTQ 172
D GV+ + +R + E I+ICE D V DV++
Sbjct: 154 DGGVLREISRHSSVEVIDICEIDKMVIDVSK 184
>At5g53120.2 68418.m06602 spermidine synthase, putative / putrescine
aminopropyltransferase, putative similar to SP|O82147
Spermidine synthase (EC 2.5.1.16) (Putrescine
aminopropyltransferase) (SPDSY) {Coffea arabica};
contains Pfam profile PF01564: Spermine/spermidine
synthase
Length = 359
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 80 DAGVVVQDNRCENHENIEICEQDNRVFDVTQ 172
D GV+ + +R + E I+ICE D V DV++
Sbjct: 154 DGGVLREISRHSSVEVIDICEIDKMVIDVSK 184
>At5g53120.1 68418.m06601 spermidine synthase, putative / putrescine
aminopropyltransferase, putative similar to SP|O82147
Spermidine synthase (EC 2.5.1.16) (Putrescine
aminopropyltransferase) (SPDSY) {Coffea arabica};
contains Pfam profile PF01564: Spermine/spermidine
synthase
Length = 359
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 80 DAGVVVQDNRCENHENIEICEQDNRVFDVTQ 172
D GV+ + +R + E I+ICE D V DV++
Sbjct: 154 DGGVLREISRHSSVEVIDICEIDKMVIDVSK 184
>At3g45330.1 68416.m04894 lectin protein kinase family protein
contains Serine/Threonine protein kinases active-site
signature, Prosite:PS00108; contains Pfam profiles
PF00069: Protein kinase domain, PF00139: Legume lectins
beta domain, PF00138: Legume lectins alpha domain
Length = 682
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/43 (27%), Positives = 15/43 (34%)
Frame = -2
Query: 594 WVSRCWHRXXXXXXXXXXXXXXSIAHSVTLVLKFSSVCRSCIP 466
WV CW + V +VLK +C S IP
Sbjct: 561 WVCECWREGSLVNAVDTRLRGKFVPGEVEMVLKLGLLCTSIIP 603
>At3g42580.1 68416.m04420 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 903
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 389 RTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSR 285
RTL ++ +L VV+ K S P +DT+ H +
Sbjct: 601 RTLEAFDDEANLNNVVEEKESPIPEKDTVPEHPGK 635
>At3g45430.1 68416.m04904 lectin protein kinase family protein
contains Pfam domains PF00138: Legume lectins alpha
domain and PF00069: Protein kinase domain
Length = 613
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/43 (23%), Positives = 16/43 (37%)
Frame = -2
Query: 594 WVSRCWHRXXXXXXXXXXXXXXSIAHSVTLVLKFSSVCRSCIP 466
WV CW + + V LV+K +C + +P
Sbjct: 496 WVCECWKKDSLLDAKDPRLGEEFVPEEVELVMKLGLLCTNIVP 538
>At1g70310.1 68414.m08089 spermidine synthase 2 (SPDSYN2) /
putrescine aminopropyltransferase 2 identical to
SP|O48661 Spermidine synthase 2 (EC 2.5.1.16)
(Putrescine aminopropyltransferase 2) (SPDSY 2)
{Arabidopsis thaliana}
Length = 340
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 80 DAGVVVQDNRCENHENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDL 226
D GV+ + R + E I+ICE D V DV + Q N Y+ V+L
Sbjct: 135 DGGVLREVARHSSVEQIDICEIDKMVVDVAK-QYFPNVAVGYEDPRVNL 182
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,883,223
Number of Sequences: 28952
Number of extensions: 154685
Number of successful extensions: 551
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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