Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a05
         (209 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006A0BED Cluster: Transmembrane protein 39B.; n=1;...    31   3.9  
UniRef50_A5N1R5 Cluster: Predicted methyl-accepting chemotaxis p...    31   6.8  

>UniRef50_UPI00006A0BED Cluster: Transmembrane protein 39B.; n=1;
           Xenopus tropicalis|Rep: Transmembrane protein 39B. -
           Xenopus tropicalis
          Length = 424

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +2

Query: 5   VCTFYIHFCSYVF*CH----ILTMSIVYKLTTNKRFVDN 109
           VC   +HFC+YV+ C+     LT+ +VY +      V N
Sbjct: 241 VCLILLHFCNYVYTCYHKSIFLTVVVVYHVWVRNESVTN 279


>UniRef50_A5N1R5 Cluster: Predicted methyl-accepting chemotaxis
           protein; n=1; Clostridium kluyveri DSM 555|Rep:
           Predicted methyl-accepting chemotaxis protein -
           Clostridium kluyveri DSM 555
          Length = 689

 Score = 30.7 bits (66), Expect = 6.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 4   CLYVLYTFL*LRILMSYTYNVNCLQ-IDYEQKICRQLRRASFLF 132
           C+ +   FL L I++ Y    N    I+Y  KIC+Q+   +F+F
Sbjct: 307 CIAISIVFLILSIIIGYLIAKNISDPINYLTKICKQMANGNFVF 350


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,905,337
Number of Sequences: 1657284
Number of extensions: 2198277
Number of successful extensions: 4471
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4471
length of database: 575,637,011
effective HSP length: 48
effective length of database: 496,087,379
effective search space used: 10417834959
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)