Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a05
         (209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    24   3.2  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    24   3.2  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    23   5.5  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   5.5  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.3  
SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       23   7.3  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    22   9.6  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    22   9.6  

>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 163 RVNKECK*SYEKEKRH 116
           +V  +CK  YEKEK H
Sbjct: 108 KVTDKCKSFYEKEKNH 123


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -2

Query: 178 PIKECRVNKECK*SYEKEKRHDAIVYKSFVRSQFVDN*HCKYMTLKYVTTKMYIK 14
           P K    +K  K    +   + +++YKS V  + +D+   K + LK++     +K
Sbjct: 348 PTKLSMASKHSKNLVSERMLYLSLMYKSLVDLKTIDSFSLKLLFLKFMICSCMVK 402


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 153 RNVNKVMKKKRGTTQLSTNL 94
           RN+NK+ +KK     LST+L
Sbjct: 295 RNINKLARKKNVFELLSTSL 314


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 266

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 34 LRILMSYTYNVNCLQIDYEQKI 99
          L IL +Y  N NC +  YEQ +
Sbjct: 30 LYILDNYLKNANCSENTYEQAL 51


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -2

Query: 130 KEKRHDAIVYKSFVRSQFVDN*HCKYMTLKYVTTKMY 20
           +E +H   + K  V     D  +CKY+T  +   K +
Sbjct: 19  QEVQHPCSILKYKVYFVTTDTFYCKYLTASFTGLKKF 55


>SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 53  ILTMSIVYKLTTNKRFVDNCVV 118
           +L   I+YKL T  RFV N  V
Sbjct: 59  LLDCCILYKLQTEDRFVYNMQV 80


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 135 MKKKRGTTQLSTNLL 91
           +K+KR  T LST LL
Sbjct: 122 LKRKRAVTSLSTGLL 136


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +1

Query: 52  YTYNVNCLQI--DYEQKICRQLRRASFLFH 135
           Y ++ +C      YE    R LRR S L+H
Sbjct: 97  YDFSRHCTDYGHSYEWPYFRSLRRESMLYH 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,551
Number of Sequences: 5004
Number of extensions: 10605
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)