Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a05
         (209 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016418-3|AAK18905.1|  210|Caenorhabditis elegans Hypothetical ...    26   3.2  
AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical ...    25   9.7  
AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF016418-3|AAK18905.1|  210|Caenorhabditis elegans Hypothetical
           protein C49G7.10 protein.
          Length = 210

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 205 FFHNYKIQMPIKEC-RVNKECK*SYEKEKRHDAIVYKS 95
           FFHNY +Q PI++  ++N +   SY    +     YKS
Sbjct: 67  FFHNYFLQFPIRQLHQLNADNSYSYVYANQTYGQSYKS 104


>AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical
           protein F52F10.2 protein.
          Length = 508

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 3   VSVRFIYIFVVTYFNVIYL 59
           V  RFIY+F ++ F ++Y+
Sbjct: 356 VQPRFIYLFSISLFTMLYI 374


>AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical
           protein C11D9.1 protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 58  YNVNCLQIDYEQKICRQLRRASFLF 132
           YN+ C Q   +Q + + +++A  LF
Sbjct: 515 YNIECCQSQLKQHLIKNIKKARTLF 539


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,181,692
Number of Sequences: 27780
Number of extensions: 63137
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)