Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a05
         (209 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    25   5.2  
At2g44480.1 68415.m05530 glycosyl hydrolase family 1 protein con...    25   6.9  

>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 19  YTFL*LRILMSYTYNVNCLQIDYEQKICRQLRRASFLFHNFIY 147
           Y FL L++  +++ NVNC        IC  L   S L+H+  Y
Sbjct: 181 YPFLSLKLYHNFSENVNC--------ICCDLALFSMLYHSSTY 215


>At2g44480.1 68415.m05530 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966) [Prunus serotina]
          Length = 517

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = +1

Query: 52  YTYNVNCLQIDYEQKICRQLRRASFLFHNFI 144
           Y Y    + +D++  + R L+ ++  +H+F+
Sbjct: 478 YKYRYGLVYVDFQDGLKRHLKSSALWYHHFL 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,578,936
Number of Sequences: 28952
Number of extensions: 47699
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 12,070,560
effective HSP length: 49
effective length of database: 10,651,912
effective search space used: 213038240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)