Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a03
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...   191   7e-50
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.88 
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    28   1.5  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    28   1.5  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   2.0  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.7  
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    27   3.5  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    26   4.7  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           26   6.2  

>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score =  191 bits (466), Expect = 7e-50
 Identities = 90/125 (72%), Positives = 103/125 (82%)
 Frame = +1

Query: 196 YHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKIVDAKFKTFG 375
           YH NV+DHY NPRNVG+L K D +VG GLVGAPACGDVM+L I+V+++G I D KFKTFG
Sbjct: 54  YHKNVLDHYNNPRNVGTLPKGDPDVGIGLVGAPACGDVMRLAIRVNKDGVIEDVKFKTFG 113

Query: 376 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDYR 555
           CGSAIASSS  T  VKG T++EA K+KNT IAKEL LPPVKLHCSMLAEDAIK+A+  YR
Sbjct: 114 CGSAIASSSYVTTMVKGMTLEEASKIKNTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYR 173

Query: 556 IKQQT 570
            KQ T
Sbjct: 174 SKQLT 178


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 476 SLAISVFFN-FSASSTVFPLTHSVARELEAIAEPHPKVLNLAS 351
           +L +S F +   A+  V P+ H V   L   A+PHP++  LAS
Sbjct: 763 TLVVSSFISHIVAAMVVLPIVHEVGSRL---ADPHPRLFVLAS 802


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +1

Query: 181 ILAAPYHANVIDHYEN--PRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKIVD 354
           +LA  Y        E+  P    S+D+ + ++ +  +GAP   ++ +L   V+ N +  D
Sbjct: 580 VLARVYKEEFAPFLEHIVPALFKSIDQDESDILSERIGAPTAEEISQLLDSVETNEEEND 639

Query: 355 AKF-KTFGCGSAIA 393
            +  K  G  SAIA
Sbjct: 640 EELEKAMGVNSAIA 653


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 464 SVFFNFSASSTVFPLTHSVARELEAIAEPHPKVLNLASTIFPFSSTLI 321
           SVF     ++ +F L+ S   +L    EPH ++++  S  FP+ S  I
Sbjct: 245 SVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTI 292


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 304 DVMKLQIKVDENGKIVDAKF 363
           DVMK+ I V  NG+IVD+ F
Sbjct: 194 DVMKVDIGVHVNGRIVDSAF 213


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 343 KIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKL 453
           K V  +F T G  S I ++ ++    KGK +DEAL+L
Sbjct: 597 KRVLGEFLTKGSNSHILNAFISAFDFKGKRIDEALRL 633


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 709 IYKQNNNFIFEILKRQKL*YGLLRIHNFITDLFHFVESLITI 584
           +Y  NN F FE  +R+ L   + R  N  T  FH VE+L T+
Sbjct: 92  LYNCNNIFFFESRRREDLYLHIARAPNGPTVKFH-VENLHTM 132


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 336 LVHFDLQLHYVSTCRCTNEACTYIFIFL 253
           L H+   L Y  TCRC  +    ++ FL
Sbjct: 52  LTHYQWYLIYKHTCRCFQQVVRIVYWFL 79


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 219 MVNDVC--MIRCRKNHIRTSKAFKTH 148
           +   VC  +++C K H+  S+ F+TH
Sbjct: 58  LTKQVCVELMQCNKKHLEASRYFQTH 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,282
Number of Sequences: 5004
Number of extensions: 59376
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)