Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a03
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04080.1 68417.m00577 iron-sulfur cluster assembly complex pr...   218   3e-57
At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex pr...   217   8e-57
At3g01020.1 68416.m00003 iron-sulfur cluster assembly complex pr...   210   9e-55
At2g14920.1 68415.m01697 sulfotransferase family protein similar...    30   1.8  
At3g50100.1 68416.m05477 exonuclease family protein contains exo...    28   5.4  
At4g14080.1 68417.m02173 glycosyl hydrolase family 17 protein / ...    28   7.1  
At3g61590.1 68416.m06898 F-box family protein contains weak hit ...    27   9.4  

>At4g04080.1 68417.m00577 iron-sulfur cluster assembly complex
           protein, putative similar to ISCU2 (GI:11545707) [Homo
           sapiens]
          Length = 171

 Score =  218 bits (532), Expect = 3e-57
 Identities = 99/138 (71%), Positives = 117/138 (84%)
 Frame = +1

Query: 169 SPNVILAAPYHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKI 348
           +P  +++  YH NVIDHY+NPRNVGS DK D NVGTGLVGAP CGDVMKLQ+K D +G+I
Sbjct: 19  TPFPVVSRLYHPNVIDHYDNPRNVGSFDKNDPNVGTGLVGAPQCGDVMKLQVKFDGSGQI 78

Query: 349 VDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDA 528
           +DAKFKTFGCGSAIA+SS+ATEWVKGK+V+E L +KN+ IAK LSLPPVKLHCSMLAEDA
Sbjct: 79  IDAKFKTFGCGSAIAASSVATEWVKGKSVEEVLTIKNSQIAKHLSLPPVKLHCSMLAEDA 138

Query: 529 IKAALSDYRIKQQTENKE 582
           IKAA+ +Y+ KQ   N E
Sbjct: 139 IKAAIKNYKEKQDKANGE 156


>At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex
           protein, putative similar to iron-sulfur cluster
           assembly complex ISCU1 (GI:11545705) [Homo sapiens];
           nifU protein homolog YPL135w (GI:15619823)
           [Saccharomyces cerevisiae] PIR2:S69049
          Length = 167

 Score =  217 bits (529), Expect = 8e-57
 Identities = 101/128 (78%), Positives = 113/128 (88%), Gaps = 1/128 (0%)
 Frame = +1

Query: 196 YHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDEN-GKIVDAKFKTF 372
           YH NVIDHY+NPRNVGS DK D NVGTGLVGAPACGDVMKLQIKVDE  G+IVDA+FKTF
Sbjct: 29  YHENVIDHYDNPRNVGSFDKNDPNVGTGLVGAPACGDVMKLQIKVDEKTGQIVDARFKTF 88

Query: 373 GCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDY 552
           GCGSAIASSS+ATEWVKGK +++ L +KNT+IAK LSLPPVKLHCSMLAEDAIKAA+ DY
Sbjct: 89  GCGSAIASSSVATEWVKGKAMEDVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 148

Query: 553 RIKQQTEN 576
           + K+   N
Sbjct: 149 KEKRVKTN 156


>At3g01020.1 68416.m00003 iron-sulfur cluster assembly complex
           protein, putative similar to ISCU2 (GI:11545707) [Homo
           sapiens]; similar to NIFU-like protein (GI:15919270)
           [Cowdria ruminantium]
          Length = 163

 Score =  210 bits (512), Expect = 9e-55
 Identities = 92/127 (72%), Positives = 111/127 (87%)
 Frame = +1

Query: 196 YHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKIVDAKFKTFG 375
           YH NVIDH+ENPRNVGS ++ D NVGTGLVGAPACGD+M LQIKVD++G+I+D +FKTFG
Sbjct: 27  YHENVIDHFENPRNVGSFNRNDPNVGTGLVGAPACGDLMSLQIKVDDSGQIIDTRFKTFG 86

Query: 376 CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDYR 555
           CGSAIASSS+A+EW+KGKT+DE + +KN +IAK L LPPVKLHCSMLAEDAIK+A+ DY+
Sbjct: 87  CGSAIASSSVASEWIKGKTLDEVMTIKNAEIAKHLRLPPVKLHCSMLAEDAIKSAVRDYK 146

Query: 556 IKQQTEN 576
            KQ   N
Sbjct: 147 EKQAKTN 153


>At2g14920.1 68415.m01697 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420004; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 333

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = -2

Query: 192 CRKNHIRTSKAFKTHTSTNSVD*KSHFIYFRKTNSDDKRSYILDDVVIDYTLII 31
           C  +++R+ +  KT TS+  VD KS   YFRK    D +SY+  ++V    +II
Sbjct: 273 CSLSNLRSVEINKTRTSSR-VDFKS---YFRKGQVGDWKSYMTPEMVDKIDMII 322


>At3g50100.1 68416.m05477 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 406

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -3

Query: 449 FSASSTVFPLTHSVARELEAIAEPHPKVLNLASTIFPFSST 327
           F ++ T+  + HS+ R+LE +   HPKV++ A  +F + +T
Sbjct: 213 FLSTGTIL-VGHSLNRDLEVLKIDHPKVIDTA-LVFKYPNT 251


>At4g14080.1 68417.m02173 glycosyl hydrolase family 17 protein /
           anther-specific protein (A6) identical to probable
           glucan endo-1,3-beta-glucosidase A6 precursor SP:Q06915
           from [Arabidopsis thaliana]
          Length = 478

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -3

Query: 389 IAEPHPKVLNLASTIFPFSSTLICNFITSPHAGAPTRP---VPTFLSFLSNE 243
           I E    +LN A+    ++  LI     SP  G P+RP   +PTF+  L NE
Sbjct: 289 IDETGANILNAAT----YNRNLIKKMSASPPIGTPSRPGLPIPTFVFSLFNE 336


>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
           Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
           Pisum sativum, EMBL:AF004843
          Length = 411

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 189 RKNHIRTSKAFKTHTSTNSVD*KSHFIYFRKTNSDDKRSYILDDVV 52
           R N I +S+ F  + S NSV  +    YF  T +DD   Y  D ++
Sbjct: 69  RWNEIVSSRRFLCNFSNNSVSQRPW--YFMFTTTDDPSGYAYDPII 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,526,159
Number of Sequences: 28952
Number of extensions: 292353
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)