Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a01
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...   119   3e-28
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    81   1e-16
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    59   6e-10
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    44   2e-05
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    39   5e-04
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    37   0.002
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    36   0.006
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    28   1.3  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    27   2.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   3.8  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   6.7  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   6.7  
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    25   8.8  

>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score =  119 bits (287), Expect = 3e-28
 Identities = 60/148 (40%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
 Frame = +2

Query: 161 YLCKAAEEDVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAAGLLKTDVPP 340
           + C +AE  V  +     + +++     +V FYAPWCGHCK L PEY  AA  L+ D   
Sbjct: 17  FFCASAE--VPKVNKEGLNELITADKVLMVKFYAPWCGHCKALAPEYESAADELEKD--G 72

Query: 341 VALAKVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMRAQVGPSS 520
           ++L +VDCTE G   C ++S+ GYPTL +F+ G+  S+Y+GPR+ + +VKYMR Q+ P+ 
Sbjct: 73  ISLVEVDCTEEG-DLCSEYSIRGYPTLNVFKNGKQISQYSGPRKHDALVKYMRKQLLPTV 131

Query: 521 KELLTVADFEAFTSK-DEVVVVGFFEKE 601
           K  ++    E F  K D++ VV FF+ +
Sbjct: 132 KP-ISKDTLENFVEKADDLAVVAFFKDQ 158



 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
 Frame = +2

Query: 176 AEEDVLDLTDSDFS-AVLSQHDTALVMFYAPWCGHCKRLKPEYAVAAGLLKTDVPPVALA 352
           ++ED++ L   +F   V+ +    LV FYAPWCGHCK L P Y   A     D   V +A
Sbjct: 353 SQEDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDD-SNVVVA 411

Query: 353 KVDCTEGGKSTCEQFSVSGYPTLKIFRKGELSS--EYNGPRESNGIVKYM--RAQVGPSS 520
           K+D TE   S     S+SG+PT+  F+  +  +   Y G R    +  ++   A   P  
Sbjct: 412 KIDATENDISV----SISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDKHASFEPIK 467

Query: 521 KE 526
           KE
Sbjct: 468 KE 469


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
 Frame = +2

Query: 98  KAPAKFKMFGSLKFVLLLGIIYLCKAAEEDVLDLTDSDFSAVLSQHDTALVMFYAPWCGH 277
           + P  F +F +  F L+ G+         + ++L   +F   +     +LV+FYAPWCG+
Sbjct: 4   RIPTLFTLFLAC-FSLVSGVFGYSPMFGSNTIELNSKNFRKFVKAKGPSLVVFYAPWCGY 62

Query: 278 CKRLKPEYAVAAGLLKTDVPPVALAKVDC-TEGGKSTCEQFSVSGYPTLKIF---RKGE- 442
           CK+L P Y   A  L + +P  A   VDC  +  ++ C Q+ V G+PT+K+     KG  
Sbjct: 63  CKKLVPTYQKLASNLHSLLPVTA---VDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSS 119

Query: 443 -LSSEYNGPRESNGIVKYMRAQVGPSSKELLT 535
             S++YNG R    + K++   + PS  ++LT
Sbjct: 120 LSSTDYNGDRSYKSLQKFVSDSI-PSKVKILT 150


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
 Frame = +2

Query: 185 DVLDLTDSDFS-AVLSQHDTALVMFYAPWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVD 361
           +V++L   +F   V+      LV FYA WCG+CKRL P Y     + K + P V + K++
Sbjct: 141 NVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNE-PNVEIVKIN 199

Query: 362 CTEGGKSTCEQFSVSGYPTLKIFRKGELSSE--YNGPRESNGIVKYMRAQVG 511
             +          V+ +PT+K F K +      Y G R    +++Y+  + G
Sbjct: 200 -ADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSG 250



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
 Frame = +2

Query: 242 ALVMFYAPWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVSGYPTL 421
           AL+ FYA WCGHCK L P Y    G L  D   V + K+D  +      +++ ++G+PTL
Sbjct: 42  ALIEFYATWCGHCKSLAPVYE-ELGALFEDHNDVLIGKID-ADTHSDVADKYHITGFPTL 99

Query: 422 KIF-RKGELSSEYNGPRESNGIVKYMRAQVGPSSKELL 532
             F   G    +Y+  R+ + + +++  + G   ++++
Sbjct: 100 IWFPPDGSEPVQYSNARDVDSLTQFVSEKTGIKKRKIV 137


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
 Frame = +2

Query: 197 LTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAAGLLKTDV--PPVALAKVDCTE 370
           LTD+D  + +S+  T  + +Y P CG CKRL P +       K  V        +VDC++
Sbjct: 31  LTDNDLESEVSK-GTWFIKYYLPSCGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSK 89

Query: 371 GGKSTCEQFSVSGYPTLKIFRKGELSSE--YNGPRESNGIVKYMRAQVGPSSKELLTVAD 544
              S+C   ++   PTL +++ GE+  E  +        ++ ++   + P +   +  +D
Sbjct: 90  -ELSSCA--NIRAVPTLYLYQNGEIVEEVPFGASTSEASLLDFVETHLNPDTDPDIP-SD 145

Query: 545 FEAFTSKD 568
            +  T +D
Sbjct: 146 EDVLTDED 153



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 30/134 (22%), Positives = 58/134 (43%)
 Frame = +2

Query: 203 DSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKS 382
           D+D  A L+  +   + FY+  C  C  +   +   A  ++  +    +A ++C    K 
Sbjct: 288 DADIDAALTDKEGWFIQFYSSECDDCDDVSTAWYAMANRMRGKLN---VAHINCAVS-KR 343

Query: 383 TCEQFSVSGYPTLKIFRKGELSSEYNGPRESNGIVKYMRAQVGPSSKELLTVADFEAFTS 562
            C+Q+S+  +PT  +F K E   EY G      +V +         +E+  +    A  +
Sbjct: 344 ACKQYSIQYFPTF-LFFKEEAFVEYVGLPNEGDLVSFAEEAANFEIREVELLDTVNAEKN 402

Query: 563 KDEVVVVGFFEKES 604
            D V  + F++ +S
Sbjct: 403 GD-VFFLYFYDDDS 415


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = +2

Query: 206 SDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKST 385
           S+F +++ Q    +V F+A WCG CK + P++                 KVD  +  +  
Sbjct: 9   SEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFE----QFSNTYSDATFIKVDVDQLSEIA 64

Query: 386 CEQFSVSGYPTLKIFRKGELSSEYNG 463
            E   V   P+  +++ GE   E  G
Sbjct: 65  AEA-GVHAMPSFFLYKNGEKIEEIVG 89


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = +2

Query: 209 DFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTC 388
           D++  +S     +V FYA WCG CK LKP        L       +   V+  +      
Sbjct: 27  DYNTRISADKVTVVDFYADWCGPCKYLKP----FLEKLSEQNQKASFIAVN-ADKFSDIA 81

Query: 389 EQFSVSGYPTLKIFRKGE 442
           ++  V   PT+ +FRKG+
Sbjct: 82  QKNGVYALPTMVLFRKGQ 99


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = +2

Query: 257 YAPWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVSGYPTLKIFRK 436
           YA WCG CK + P ++  A   K   P    AKV+  E  +       V   PT   F  
Sbjct: 27  YADWCGPCKAISPLFSQLAS--KYASPKFVFAKVNVDE-QRQIASGLGVKAMPTFVFFEN 83

Query: 437 GE 442
           G+
Sbjct: 84  GK 85


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/73 (23%), Positives = 29/73 (39%)
 Frame = +2

Query: 245 LVMFYAPWCGHCKRLKPEYAVAAGLLKTDVPPVALAKVDCTEGGKSTCEQFSVSGYPTLK 424
           L+ FYAPW   CK++   +   A     D       K++  E      E F V+  P   
Sbjct: 24  LLNFYAPWAAPCKQMNQVFDQFA----KDTKNAVFLKIE-AEKFSDIAESFDVNAVPLFV 78

Query: 425 IFRKGELSSEYNG 463
           +    ++ +  +G
Sbjct: 79  LIHGAKVLARISG 91


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 189 FSILQIPTFRLFYLNMIQPWSCF 257
           F  LQ+  FR  + N+++PW CF
Sbjct: 208 FYCLQLQMFRKMH-NIVRPWDCF 229


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 26/99 (26%), Positives = 45/99 (45%)
 Frame = -3

Query: 615 PFRSDSFSKNPTTTTSSLEVKASKSATVRSSLELGPTWARMYLTMPLDSLGPLYSEESSP 436
           PF S+S S  PT+  SS+    S +++  ++L    T +   +T      G   +  SSP
Sbjct: 455 PFYSNS-SVIPTSAPSSVSSFTSSNSSYTTTL----TASNTTVTFTGTGTGSATATSSSP 509

Query: 435 FLNIFSVGYPDTENCSQVLLPPSVQSTLASATGGTSVFN 319
           + +  S+  P T + S  +   S   +  S+  GTS  +
Sbjct: 510 YYSNSSIIVPTTVSTSGSVSSFSSSPSPTSSFSGTSALS 548


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = -3

Query: 615 PFRSDSFSKN---PTTTTSSLEVKASKSATVRSS-LELGPTWARMYLTMPLDSLGPLYSE 448
           PF+  S++ N   P+ TT   ++  S   TV S  L    +         + S GP Y  
Sbjct: 272 PFQQPSYNPNALVPSYTTLVSQLPPSPCLTVSSGPLSTASSIPSNCSCPSVKSSGPSYHA 331

Query: 447 ESSPFLNIFSVGYPDT 400
           E    +N ++ G P T
Sbjct: 332 EQEVNVNSYNGGIPST 347


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 179 EEDVLDLTDSDFSAVLSQHDTALVMFYAPWCGHCKRLKPEYAVAAGLLKT 328
           EE V+D+ + D +AVL      L +  +P+   CK   P+  V A +L+T
Sbjct: 324 EEAVIDVDELDKNAVLFGGTRVLQVTQSPF---CKLKTPDNGVPAIVLRT 370


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 155 IIYLCKAAEEDVLDLTDSDFSAVLSQHD 238
           +IY C+AA+E++LD         LS+ D
Sbjct: 6   LIYACRAADEELLDEIIEKCPQELSRRD 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,887
Number of Sequences: 5004
Number of extensions: 51412
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)