Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p23
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845...    30   2.0  
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110...    29   4.6  
02_05_0796 + 31800256-31800528,31800635-31800758,31802642-318027...    29   4.6  
02_02_0679 - 12875988-12876016,12876186-12876306,12877792-12877974     29   4.6  
07_03_1248 - 25165929-25166891,25169159-25169473                       28   6.1  
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540...    28   8.1  

>11_06_0506 -
           24380469-24380632,24381737-24383893,24384488-24384541,
           24384543-24384597,24384914-24384916,24385192-24385231,
           24385576-24385632,24388124-24388412,24389764-24389771,
           24390633-24390688,24391207-24391488,24391651-24391811,
           24391887-24392121,24392860-24392943,24393022-24393117,
           24393333-24394055,24396523-24396987
          Length = 1642

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 636 LFDCGYIGPVRHEHDAQRREVKVYDDE 556
           L D   +G + H H+  R EV+VYDD+
Sbjct: 722 LLDPDDVGRLNHVHNDDREEVEVYDDD 748


>03_05_0941 +
           29008322-29009686,29009929-29010012,29010889-29011052,
           29011208-29011233,29011494-29011583,29012135-29012229,
           29012328-29012495
          Length = 663

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
 Frame = +1

Query: 325 LFVVDEFLKISLGLPVSSEEVPVLSNVTVDHVDILEPD---VNYYDANFYNA 471
           L  VD+  ++ L  P++ E++ + S +T++HV+ +  +   ++ Y+ ++Y+A
Sbjct: 158 LVTVDDVSEMHLVNPITGEQIALPSVITIEHVNPIFNESGAIHMYEYSWYSA 209


>02_05_0796 +
           31800256-31800528,31800635-31800758,31802642-31802771,
           31804336-31804414,31804848-31805133,31805273-31805385
          Length = 334

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 294 TSGGATEGATVVCGG*VP*DQPRAARVQRGSASIEQCHSGPRRYIG 431
           T GG      +   G  P   P   R  RGS   +Q H GP+ Y+G
Sbjct: 110 TIGGRRANCNIASMG-PPRPSPSRGRAPRGSLFPDQPHMGPQPYMG 154


>02_02_0679 - 12875988-12876016,12876186-12876306,12877792-12877974
          Length = 110

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 87  VSIYVFFF*NKTNKAHLYKFNFM 155
           +++Y+ F  NKT+K HLYK   +
Sbjct: 83  ITVYIVFKLNKTSKKHLYKVGIL 105


>07_03_1248 - 25165929-25166891,25169159-25169473
          Length = 425

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +3

Query: 555 PHHRI-PLP--HVAGHRVRVVLDQCIRNQTDTSSRTASHLASPLVQHP 689
           PH+++ PL   H++ H+V  +LDQ    + D+S+   + L S  +Q P
Sbjct: 298 PHYQVMPLNQNHLSFHQVEPMLDQVEEIKDDSSNDNVASLDSNCIQDP 345


>06_01_0733 +
           5405889-5405922,5405923-5405975,5406430-5406543,
           5407464-5407523,5408139-5408217,5410661-5410728,
           5411198-5411302,5411887-5411994,5412087-5412279,
           5412818-5412897,5413309-5413536,5414112-5414252,
           5414341-5414466,5414561-5414611,5414879-5414956,
           5415814-5415960,5416685-5417179
          Length = 719

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 364 LPVSSEEVPVLSNVTVDHVDILEPDVN 444
           LPV  +E P++S  T DHVDIL    N
Sbjct: 367 LPV--QETPLVSRKTSDHVDILREQFN 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,599,746
Number of Sequences: 37544
Number of extensions: 348716
Number of successful extensions: 1114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)