Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p23
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44690.1 68416.m04806 expressed protein                             29   2.9  
At3g21850.1 68416.m02754 E3 ubiquitin ligase SCF complex subunit...    29   2.9  
At2g44130.1 68415.m05489 kelch repeat-containing F-box family pr...    28   5.1  
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ...    28   5.1  
At5g08250.1 68418.m00969 cytochrome P450 family protein contains...    28   6.8  
At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR...    27   8.9  
At1g53610.1 68414.m06092 hypothetical protein                          27   8.9  

>At3g44690.1 68416.m04806 expressed protein 
          Length = 1176

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 608 TGPMYPQSNRYKLSHS*PPRLTTRPASS 691
           +G  YP+S+R+  SH  P RL+  P  S
Sbjct: 104 SGKRYPESSRFITSHDHPSRLSDEPKPS 131


>At3g21850.1 68416.m02754 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At9), putative E3 ubiquitin ligase; similar
           to Skp1 homolog SKP1a GI:3068807 from [Arabidopsis
           thaliana]
          Length = 153

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +3

Query: 480 HFFQVPRLLFRMFIVTLHFRAIREAPHHRIPLPHVAGHRVRVVLDQCIRNQTDTSS 647
           H F+V     R   + +   +  +   + IPLP+V G  + +V++ C ++  D ++
Sbjct: 14  HSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKHHVDAAN 69


>At2g44130.1 68415.m05489 kelch repeat-containing F-box family
           protein very low similarity to SP|Q9ER30 Kelch-related
           protein 1 (Sarcosin) {Rattus norvegicus}; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 409

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = -1

Query: 690 EDAGRVVRRGG*LCESLYLFDCGYIGP----VRHEHDAQR---REVKVYDDE 556
           E AGR  RRG  + ES   F C  + P    V   HD Q+   R  +VYD E
Sbjct: 173 EFAGRKWRRGAPMKESRSFFACASVSPTKVYVAGGHDDQKNALRSAEVYDVE 224


>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
           (ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
           type
          Length = 178

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 439 HLAPIYRRGPL*HCSILALPRWTRAALG*S*GTHPPQTTVAPSVAPPLVP 290
           HL+  Y+      CSI +    T  ALG     H    TV PS   P++P
Sbjct: 83  HLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRHRSSMTVEPSFISPMIP 132


>At5g08250.1 68418.m00969 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 488

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 322 PLFVVDEFLKISLGLPVSSEEVPVLSNVTVDHVDILEPDV 441
           P+F  +E  K+       SE + +  +V VDH ++LE DV
Sbjct: 322 PVFRPEEIKKMDYLQAALSETLRLYPSVPVDHKEVLEDDV 361


>At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 997

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 294 CQGLQPQRHYSFKRKVTHVITDNLNTTQASVTHCIRLL 181
           C  L+    +S K K  +++   +    AS+THC RLL
Sbjct: 704 CPQLKTFPAFSTKIKRLYLVRTGVEEVPASITHCSRLL 741


>At1g53610.1 68414.m06092 hypothetical protein
          Length = 94

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 209 ACVVFKLSVITCVTFRLNE 265
           ACV+F L VI CV++R  E
Sbjct: 13  ACVIFALIVIGCVSYRKKE 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,696
Number of Sequences: 28952
Number of extensions: 272357
Number of successful extensions: 856
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)