Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p20
         (703 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4A7Z6 Cluster: Lppt protein; n=3; Mycoplasma hyopneumo...    33   6.8  
UniRef50_Q0ET18 Cluster: Radical SAM; n=4; Clostridia|Rep: Radic...    33   9.0  

>UniRef50_Q4A7Z6 Cluster: Lppt protein; n=3; Mycoplasma
           hyopneumoniae|Rep: Lppt protein - Mycoplasma
           hyopneumoniae (strain 7448)
          Length = 957

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 328 SSMPIIRLLCISVFHRDSFIMSFEVK 251
           +S P   LLC+S F+RD FI+  E+K
Sbjct: 591 TSFPTNTLLCLSTFYRDKFILKLELK 616


>UniRef50_Q0ET18 Cluster: Radical SAM; n=4; Clostridia|Rep: Radical
           SAM - Thermoanaerobacter ethanolicus X514
          Length = 282

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +3

Query: 153 ILFSK*SYKKKCNGFLYTSKIAYNYFSDMVLRFFTSKLIMKESR*NTLIHNSRII 317
           I+F + +Y KK   +L+  +  YNY SD+V+RF   + I+   +  T+  ++  I
Sbjct: 208 IVFGRLNYNKKVREYLWYKEF-YNYCSDVVIRFCEQRNILYHIKDGTITDDAPYI 261


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,807,982
Number of Sequences: 1657284
Number of extensions: 13256609
Number of successful extensions: 27477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27470
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)