Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p20
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    31   0.12 
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    28   1.1  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   2.0  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.6  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    26   6.0  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   7.9  

>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +1

Query: 346 PSTTRS*PVLVKLERPPGHQ*SFNHKKKNLDHSAKYLSINLCVLLYG 486
           PS       LV   +PP     +N KK +LD SA    I+LC+  YG
Sbjct: 726 PSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWISLCLQPYG 772


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 383 SFTRTGQDLVVLGL*PISIINANYSTIMYQCI 288
           SFT++G+ L  +G  P +     Y T+ +QC+
Sbjct: 296 SFTQSGRHLAEIGAEPSAFATRWYLTVFHQCV 327


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = -3

Query: 605 FTNTKQLINHHYYTFKPEETLNRQNKTNRTT*HLAFPPKSPYNNTHKLIDRYLALW 438
           FTNT++L++   +  +PE+ L + N+T+    ++       +NN    I R++ +W
Sbjct: 20  FTNTEKLVDELDHNVEPEQLLEK-NRTDFKLMYVIVKFYRWFNNL-SFITRWITIW 73


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 636 PLDVTSRDPPKSPLKKSQT 692
           PL V+ R PPK PL+K  T
Sbjct: 298 PLHVSPRKPPKPPLRKVST 316


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 644 VQRLCFIFPHLCTFTNTK-QLINHHYYTFKPE 552
           +Q++C +F H  T  +T+ Q++   Y+   PE
Sbjct: 161 LQQICVVFKHKQTSQDTRFQILEFFYFYLSPE 192


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 588 LFSICESAQMWENETKPLDVTSRDPPKSPLKKSQTNS 698
           +F+  +   M+E  +K     S+ P K+P KKS  NS
Sbjct: 81  IFARLDLENMFEESSKQ-SPPSKSPTKNPSKKSSNNS 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,606
Number of Sequences: 5004
Number of extensions: 61320
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)