Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p20
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0258 + 21750922-21752272,21752971-21753377                       31   1.2  
04_04_0960 + 29704009-29705679                                         29   4.7  
12_02_0546 - 20289272-20289470,20290054-20290223                       28   6.2  
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834           28   6.2  
11_06_0184 - 21006659-21009823                                         28   8.3  
09_02_0384 - 8294914-8297817                                           28   8.3  

>11_06_0258 + 21750922-21752272,21752971-21753377
          Length = 585

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 402 VARRPFQFHQDWSRSSGARFIANIHHQCQL-FDYYV 298
           VAR+ F   ++WS S  +RF+ N+H  C + F Y V
Sbjct: 273 VARKVFH-EREWSESLASRFLENVHGLCGIPFRYLV 307


>04_04_0960 + 29704009-29705679
          Length = 556

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -3

Query: 569 YTFKPEETLNRQNKTNRTT*HLAFPPKSPYNNTHKLIDRYLALWSRFFFL*LKDYWWPG 393
           Y  +P     R+ +T+     L+ PP  P    H+L D           + + DYW PG
Sbjct: 421 YAAEPHNEPRRRRRTSSFFVGLSKPPAQPQQQQHQLFDLRATTEGFKEEVYMYDYWRPG 479


>12_02_0546 - 20289272-20289470,20290054-20290223
          Length = 122

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 626 IFPHLCTFTNTKQLINHHYYTFKPEETLNRQN-KTNRTT*HLAFPPKSPYNNTHKLIDRY 450
           I PH+ T+    +L+  H+       T++  +  TN+ + H +FP K+P ++  K  +RY
Sbjct: 67  IHPHMHTYA---KLL--HWKIASMSSTISMSSLSTNKLSIHASFPKKNPLHSKRKRRERY 121


>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
          Length = 939

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +3

Query: 204 TSKIAYNYFSDMVLRFFTSKLIMKESR*NTLIHNSRII 317
           TS I+ + FS+M     + KL +KE+  NT+IH+SR +
Sbjct: 545 TSAISSS-FSNMTANDHSDKLNVKENVGNTIIHSSRSV 581


>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/65 (35%), Positives = 36/65 (55%)
 Frame = +2

Query: 332 ILAINRAPLDLDQSW*NWKGLRATSNPSIIKKKILTIVPSTYLLTYVYYYMDFLAGKRGV 511
           +L  N+ PLDLD  +    G++     S IKK + ++  S+ LL  V   +D L G++G+
Sbjct: 664 LLLNNQLPLDLDLLYSIRHGMQLHPANSNIKKFLNSLSSSSRLLLTV---LD-LEGRKGL 719

Query: 512 KLCDL 526
           K  DL
Sbjct: 720 KAGDL 724


>09_02_0384 - 8294914-8297817
          Length = 967

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 614 LCTFTNTKQLINHHYYTFKPEETLNRQNKTNR 519
           LC+F N  QL  +  Y FKPEE L +  + NR
Sbjct: 15  LCSFGNCLQL--NIAYAFKPEEVLVKLTEFNR 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,576,167
Number of Sequences: 37544
Number of extensions: 329240
Number of successful extensions: 546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)