Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p20
         (703 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063302-1|AAH63302.1| 1278|Homo sapiens Niemann-Pick disease, t...    30   7.0  
AF338230-1|AAK25791.1| 1278|Homo sapiens Niemann-Pick disease C1...    30   7.0  
AF157379-1|AAD48006.1| 1278|Homo sapiens Niemann-Pick C1 protein...    30   7.0  
AF002020-1|AAB63982.1| 1278|Homo sapiens Niemann-Pick C disease ...    30   7.0  
AB209048-1|BAD92285.1| 1289|Homo sapiens Niemann-Pick disease, t...    30   7.0  

>BC063302-1|AAH63302.1| 1278|Homo sapiens Niemann-Pick disease, type
           C1 protein.
          Length = 1278

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 536 QNKTNRTT*HLAFPPKSPYNNTHKLIDRYLALWSRFFFL*LKDYWWPGGLSSFT 375
           QN  N T   + FP  + YN+T KL  +    W + F   +K+Y  P    SFT
Sbjct: 553 QNYNNATALVITFPVNNYYNDTEKL--QRAQAWEKEFINFVKNYKNPNLTISFT 604


>AF338230-1|AAK25791.1| 1278|Homo sapiens Niemann-Pick disease C1
           protein protein.
          Length = 1278

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 536 QNKTNRTT*HLAFPPKSPYNNTHKLIDRYLALWSRFFFL*LKDYWWPGGLSSFT 375
           QN  N T   + FP  + YN+T KL  +    W + F   +K+Y  P    SFT
Sbjct: 553 QNYNNATALVITFPVNNYYNDTEKL--QRAQAWEKEFINFVKNYKNPNLTISFT 604


>AF157379-1|AAD48006.1| 1278|Homo sapiens Niemann-Pick C1 protein
           protein.
          Length = 1278

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 536 QNKTNRTT*HLAFPPKSPYNNTHKLIDRYLALWSRFFFL*LKDYWWPGGLSSFT 375
           QN  N T   + FP  + YN+T KL  +    W + F   +K+Y  P    SFT
Sbjct: 553 QNYNNATALVITFPVNNYYNDTEKL--QRAQAWEKEFINFVKNYKNPNLTISFT 604


>AF002020-1|AAB63982.1| 1278|Homo sapiens Niemann-Pick C disease
           protein protein.
          Length = 1278

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 536 QNKTNRTT*HLAFPPKSPYNNTHKLIDRYLALWSRFFFL*LKDYWWPGGLSSFT 375
           QN  N T   + FP  + YN+T KL  +    W + F   +K+Y  P    SFT
Sbjct: 553 QNYNNATALVITFPVNNYYNDTEKL--QRAQAWEKEFINFVKNYKNPNLTISFT 604


>AB209048-1|BAD92285.1| 1289|Homo sapiens Niemann-Pick disease, type
           C1 variant protein.
          Length = 1289

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 536 QNKTNRTT*HLAFPPKSPYNNTHKLIDRYLALWSRFFFL*LKDYWWPGGLSSFT 375
           QN  N T   + FP  + YN+T KL  +    W + F   +K+Y  P    SFT
Sbjct: 564 QNYNNATALVITFPVNNYYNDTEKL--QRAQAWEKEFINFVKNYKNPNLTISFT 615


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,402,243
Number of Sequences: 237096
Number of extensions: 2091160
Number of successful extensions: 3052
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3052
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)