Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p16
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    29   0.64 
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   4.5  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   7.9  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    25   7.9  

>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +3

Query: 126 GKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKSAGEQN 305
           GK + +++  + P   L +  DRI+A D +  + +  K  +  + +   F++LK    Q 
Sbjct: 18  GKVRDLYECVEFPDDLLFVATDRISAYDFIMENGIPEKGKVLTKISEFWFDVLK-PHVQT 76

Query: 306 FLIEKKFELL 335
            LI  ++E L
Sbjct: 77  HLITSRWEEL 86


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 179 KQAVPRLVRNIEYLFGLTLNEKFAQFILSN 90
           +   P+L+ N+  L  L++NEK+  F++ N
Sbjct: 49  RNGAPKLLLNLFSLENLSMNEKYQVFVVLN 78


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 567 LTNFLCRWQSLPPKLNIKDK--IT-RSIKKLKIFLRCYRCRIDNEIS 698
           +T +  +   L    NI+D+  +T  S+KKL + L CY    +NE S
Sbjct: 819 ITEYYVKCAMLESFPNIRDRKGVTPSSVKKLLLDLLCYNDNANNEFS 865


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +3

Query: 105 LGKLLIEGKTKQVFDVPDQPGYCLLLNKDRITAG-DGVKAHDLEGKAAISNQTNAKVFEI 281
           LGK+      K + DV  Q    +     ++  G +GV +   +G   ++NQ N  V  +
Sbjct: 279 LGKIR-SSVNKGMTDVASQVNRGMTDVASQVNKGVNGVASQVNKGMNGVANQVNKGVTGV 337

Query: 282 LKSAGEQNFLIEKKFELLKR 341
                +    +EKKFE L++
Sbjct: 338 ASQVRKPVGKLEKKFENLEK 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,252
Number of Sequences: 5004
Number of extensions: 52824
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)