Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p16
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0139 - 1014952-1015165,1015271-1015350,1015420-1015629,101...    29   4.7  
07_03_1421 - 26451012-26451155,26451256-26451322,26451605-264516...    28   6.2  
01_07_0255 - 42322111-42322308,42322658-42322750,42323127-423233...    28   6.2  
11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155     28   8.3  
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    28   8.3  
01_01_1019 + 8057784-8058983                                           28   8.3  

>07_01_0139 -
           1014952-1015165,1015271-1015350,1015420-1015629,
           1015925-1016044,1016650-1016709,1017129-1017204,
           1018189-1018352,1018428-1018490,1018815-1018902,
           1018997-1019647,1019965-1020449
          Length = 736

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +3

Query: 12  RDPHRIGSSLHSYLRSKIAKMSHPKQVGQYKLGKLLIEGKTKQVFDVPD-QPGYCLLLNK 188
           R P  I S   S +     K+  P   GQ++ G+LL  G    V++  + Q G    + +
Sbjct: 330 RPPGAINSMQTSIVNQSAPKVEMPSVAGQWQKGRLLGSGTFGCVYEATNRQTGALCAMKE 389

Query: 189 DRITAGDGVKAHDLE 233
             I   D   A  L+
Sbjct: 390 VNIIPDDAKSAESLK 404


>07_03_1421 -
           26451012-26451155,26451256-26451322,26451605-26451657,
           26451736-26451806,26453340-26453482,26453858-26453919,
           26454008-26454100,26454203-26454314,26454432-26454547,
           26454625-26454787,26454829-26455349,26455429-26455528,
           26457472-26457552,26457666-26457877
          Length = 645

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 108 GKLLIEGKT-KQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEG 236
           G  L+ G+T K+  +V ++   CL LN  R   GD VK +   G
Sbjct: 349 GTSLVNGETQKKAEEVLEEVLLCLTLNNLRADRGDNVKENSCHG 392


>01_07_0255 -
           42322111-42322308,42322658-42322750,42323127-42323344,
           42323476-42323642,42324097-42324207,42324267-42324409,
           42324492-42324710,42324975-42325055,42325202-42325381,
           42325971-42326301,42326775-42326888,42327036-42327127,
           42327631-42328059
          Length = 791

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 279 FRTLLHLSDWK*PPFPPNRGL*HHRLR*FCPC*EASSTQVGPEHRIPV 136
           FR  LH   W+ PP PP R    HRL        +SS++    H + V
Sbjct: 24  FRRFLHSPSWRPPPPPPPR---RHRLLSTAVASSSSSSKGNAAHLVVV 68


>11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155
          Length = 871

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -3

Query: 319 FSIRKFCSPADFKISNTFAFV*LEIAAFPSKSWALTPSPAVILSLLRSKQYPGWSG 152
           FS+  FCS A     ++ A V  E+A    KS    PS  ++ S   S  Y  W+G
Sbjct: 12  FSLLLFCSYALVSPGSSDATVVDELALLSFKSMLSGPSDGLLASWNTSIHYCDWTG 67


>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -2

Query: 263  ICLIGNSRLSLQIVGFDTIACGDSVLVKKQAVPRLVRNIEYLFGLTLNEKFAQFILSNLF 84
            +CL GN +  + + GF   +  D+ L       +    + +++ L LN+     I S   
Sbjct: 925  LCLSGNCKTCVNLTGFPESSTSDACLKLHYRTLKYEDQMHHVYQLNLNDVDLHLIPSVFG 984

Query: 83   RMRHF 69
            ++R F
Sbjct: 985  QIRRF 989


>01_01_1019 + 8057784-8058983
          Length = 399

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 250 EIAAFPSKSWALTPSPAVILSLLRSKQY 167
           ++AA  S +W LT   A+ ++L R KQY
Sbjct: 100 DVAAVLSLAWCLTHGGALAMALTRRKQY 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,488,538
Number of Sequences: 37544
Number of extensions: 307020
Number of successful extensions: 634
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)