Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p16
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical pr...    64   1e-10
AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical...    30   1.4  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    29   2.4  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    29   2.4  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    29   2.4  

>U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical
           protein B0286.3 protein.
          Length = 423

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 28/62 (45%), Positives = 45/62 (72%)
 Frame = +3

Query: 111 KLLIEGKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKS 290
           +LL EGKTKQ+FD+  +  Y L+ +KD +TA + V+ ++LEGK+ I+++T + VFE L+ 
Sbjct: 15  ELLAEGKTKQIFDIKGEKDYVLIRSKDSLTAFNAVRKNELEGKSRIASKTTSNVFEYLQL 74

Query: 291 AG 296
            G
Sbjct: 75  LG 76


>AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical
           protein Y47D7A.16 protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 271 TFAFV*LEIAAFPSKSWALTPSPAVILSLLRSKQYPGWS 155
           TF F    +A F S SW  T S  + LSLL +K   GW+
Sbjct: 3   TFLFTFCLVAIFGSSSWIGTNSVWMELSLLTAKLPEGWN 41


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform a
            protein.
          Length = 2322

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 177  LLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILK-SAGEQNFLIEKKFELLKR 341
            LLN+++ +   G   H++E + ++    NAK    L  +A  +N +I K+ +LL R
Sbjct: 1588 LLNEEKWSVVMGTMEHEMEKRLSLIRTENAKTESALHLTASVKNDIIVKRTQLLTR 1643


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform b
            protein.
          Length = 2019

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 177  LLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILK-SAGEQNFLIEKKFELLKR 341
            LLN+++ +   G   H++E + ++    NAK    L  +A  +N +I K+ +LL R
Sbjct: 1588 LLNEEKWSVVMGTMEHEMEKRLSLIRTENAKTESALHLTASVKNDIIVKRTQLLTR 1643


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-mediated
            mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 177  LLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILK-SAGEQNFLIEKKFELLKR 341
            LLN+++ +   G   H++E + ++    NAK    L  +A  +N +I K+ +LL R
Sbjct: 1588 LLNEEKWSVVMGTMEHEMEKRLSLIRTENAKTESALHLTASVKNDIIVKRTQLLTR 1643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,852,503
Number of Sequences: 27780
Number of extensions: 290322
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)