Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p16
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.1  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   4.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.5  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 561 NYRIIFSSNYRSLVSSLNLI 502
           NY+ ++ +NYR L  ++N I
Sbjct: 95  NYKKLYCNNYRKLYYNINYI 114


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 561 NYRIIFSSNYRSLVSSLNLI 502
           NY+ ++ +NY+ L  ++N I
Sbjct: 95  NYKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 561 NYRIIFSSNYRSLVSSLNLI 502
           NY+ ++ +NY+ L  ++N I
Sbjct: 95  NYKKLYCNNYKKLYYNINYI 114


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 111 KLLIEGKTKQVFDVPDQP 164
           ++ +EG  K+ F+VP QP
Sbjct: 191 QVFLEGSQKRKFNVPLQP 208


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 111 KLLIEGKTKQVFDVPDQP 164
           ++ +EG  K+ F+VP QP
Sbjct: 191 QVFLEGSQKRKFNVPLQP 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,906
Number of Sequences: 438
Number of extensions: 3587
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)