Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p16
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57220.1 68416.m06370 UDP-GlcNAc:dolichol phosphate N-acetylg...    29   2.3  
At3g29380.1 68416.m03691 transcription factor IIB (TFIIB) family...    29   2.3  
At2g41490.1 68415.m05125 UDP-GlcNAc:dolichol phosphate N-acetylg...    29   3.0  
At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2...    27   9.1  
At1g65060.2 68414.m07376 4-coumarate--CoA ligase 3 / 4-coumaroyl...    27   9.1  

>At3g57220.1 68416.m06370 UDP-GlcNAc:dolichol phosphate
           N-acetylglucosamine-1-phosphate transferase, putative
           strong similarity to GI:5804772
          Length = 426

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 588 WQSLPPKLNIKDKITRSIKKLKIFLRCYRCRIDNEI 695
           +Q  PPKL +   I+  +  L ++L C+   +DNE+
Sbjct: 37  FQLAPPKLGVIFVISSLLCSLYLYLLCFHYNVDNEL 72


>At3g29380.1 68416.m03691 transcription factor IIB (TFIIB) family
           protein contains Pfam profile: PF00382 transcription
           factor TFIIB repeat
          Length = 336

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 3   HSSRDPHRIGSSLHSYLRS--KIAKMSHPKQVGQYKLGK 113
           HS RDP+R+G++ + +L+S   +  +  PK+     L K
Sbjct: 53  HSDRDPNRVGAATNPFLKSGDLVTIIEKPKETASSVLSK 91


>At2g41490.1 68415.m05125 UDP-GlcNAc:dolichol phosphate
           N-acetylglucosamine-1-phosphate transferase identical to
           GI:5804772
          Length = 431

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 600 PPKLNIKDKITRSIKKLKIFLRCYRCRIDNEI 695
           PPKL +   I+  +  L ++L C+  ++DNE+
Sbjct: 46  PPKLGVIFVISTLLCSLYLYLLCFHYKVDNEL 77


>At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2.1)
           (GLR3) plant glutamate receptor family, PMID:11379626
          Length = 909

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 144 FDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISN 254
           F+ PDQ  Y   + K + ++G G+  +  EG  A++N
Sbjct: 871 FNEPDQKSYIKDVTKCQCSSGQGMPKNGQEGANAVNN 907


>At1g65060.2 68414.m07376 4-coumarate--CoA ligase 3 /
           4-coumaroyl-CoA synthase 3 (4CL3) identical to SP|Q9S777
           4-coumarate--CoA ligase 3 (EC 6.2.1.12) (4CL 3)
           (4-coumaroyl-CoA synthase 3) {Arabidopsis thaliana}
          Length = 495

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 492 KFRAFKTSIFVFQVLFLSNK 433
           KF+ F+ S F+F VLF+ NK
Sbjct: 465 KFKGFQASPFIFIVLFIFNK 484


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,696,479
Number of Sequences: 28952
Number of extensions: 260291
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)