Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p15
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    95   9e-21
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    27   2.6  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    27   2.6  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    27   3.5  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    26   4.6  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    26   6.1  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.0  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   8.0  

>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 95.1 bits (226), Expect = 9e-21
 Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
 Frame = +2

Query: 254 DLRSDTVTKPTKAMKHAMVNSALGDDVYGEDPTVNALENKIAALLGKQAALFVPSGTMSN 433
           D RSDT+T PT  M+  M  ++ GD VY ED     LE  +A L GK+AALFV SGT  N
Sbjct: 30  DFRSDTLTVPTDEMRRIMYEASDGDCVYEEDEDTRKLEVYVAKLTGKEAALFVTSGTQGN 89

Query: 434 LIAIMVHCNKRGSEAFVGDLSHIYKYEVGGASHLAGVMLSTVANKPDGTFDLQELEDR-I 610
            + I  H ++        D +HIY +E G        ++  ++ K +     +E+E++ I
Sbjct: 90  QLCIRSHLHQPPHSIICDDRAHIYNWEAGAIGLFTQAIVRPISPKNNVYITAEEIENKLI 149

Query: 611 RGSNIHEPVTAMVAVENTHNYCGGKVLPL 697
            G++IH   T ++ +ENT     G V+PL
Sbjct: 150 LGNDIHFSPTGLICLENT---IKGAVVPL 175


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = +2

Query: 485 GDLSHIYKYEVGGASHLAGVMLSTVANKPDGTFDLQELEDRIRGSNIHEPVTAMVAVENT 664
           G+LSH + Y       +     S   +      DL +    I   N ++ +T+  A+E  
Sbjct: 209 GNLSHEFHYRHPVGEDVIYTCPSCHYSTNSEMLDLSKTSSDISCPNCNDQLTSTTAIEVG 268

Query: 665 HNYCGGKVLPLKF 703
           H +  GK+   KF
Sbjct: 269 HAFYLGKIYSSKF 281


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 593 ELEDRIRGSNIHEPVTAMVAVENTHNYCGGKVL 691
           +L   + G  +HEP+T +VA+ +T     G++L
Sbjct: 225 DLHSGVFGGTVHEPMTDLVAIMSTLVKPNGEIL 257


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 451 HHNGNKIRHSSRRYEQSGLLAQ 386
           HHN +K  H SRR+  S  +AQ
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQ 452


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 344 DPTVNALENKIAALLGKQAALFVPSGTMSNLIAI 445
           +PT +  E +IAAL    AA+   SGT +  +A+
Sbjct: 62  NPTADVFEKRIAALEHGAAAIATSSGTSALFMAL 95


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 482 VGDLSHIYKYEVGGAS-HLAGVMLSTVANKPDGTFDLQELEDRIRGSN 622
           VG++  +  Y +GG        +LST  N  DG F   E+   I G N
Sbjct: 427 VGEVVPVLHYTMGGVQVDTQSRVLSTNGNVIDGLFAAGEIVGGIHGEN 474


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 626 HEPVTAMVAVENTHNYCGG 682
           H+P TA  AV N +NY  G
Sbjct: 54  HDPATAASAVRNLNNYDAG 72


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
 Frame = +2

Query: 251 VDLRSDTVTKPTKAMK----HAMVNSALGDDVYGED 346
           +++RSD V+KP+KA K    +A+ + A   DV+ E+
Sbjct: 577 LNIRSDEVSKPSKASKTLHGYALPSLASPYDVHAEE 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,916
Number of Sequences: 5004
Number of extensions: 48374
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)