Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10p15
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0511 - 25800371-25800454,25800563-25800629,25800903-258010... 140 1e-33
01_06_0954 - 33322951-33323606,33324213-33325014 32 0.39
03_03_0129 - 14684003-14684123,14684205-14684323,14684406-146845... 29 4.8
12_01_0247 - 1836971-1837810 28 6.3
06_03_1503 - 30621089-30621170,30621258-30621438,30621462-306215... 28 6.3
10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376 28 8.4
06_01_0294 + 2151131-2151529 28 8.4
03_02_0178 + 6195402-6199158,6199438-6200003 28 8.4
>04_04_0511 -
25800371-25800454,25800563-25800629,25800903-25801000,
25801094-25801152,25801247-25801379,25801461-25801532,
25801628-25801678,25802000-25802111,25802231-25802604
Length = 349
Score = 140 bits (339), Expect = 1e-33
Identities = 66/137 (48%), Positives = 92/137 (67%), Gaps = 2/137 (1%)
Frame = +2
Query: 305 MVNSALGDDVYGEDPTVNALENKIAALLGKQAALFVPSGTMSNLIAIMVHCNKRGSEAFV 484
M + + DDV G DPT + E ++A + GK+AALFVPSGTM+NLI+++VHC+ RGSE +
Sbjct: 1 MAAADVDDDVLGADPTAHRFEMEMARITGKEAALFVPSGTMANLISVLVHCDTRGSEVIL 60
Query: 485 GDLSHIYKYEVGGASHLAGVMLSTVANKPDGTFDLQELEDRIRGSN--IHEPVTAMVAVE 658
GD SHI+ YE GG S + GV TV N PDGT D+ ++ IR + ++ P T ++ +E
Sbjct: 61 GDNSHIHIYENGGISTIGGVHPKTVRNNPDGTMDIDKIVVAIRHPDGALYYPTTRLICLE 120
Query: 659 NTHNYCGGKVLPLKFLD 709
NTH CGGK L ++ D
Sbjct: 121 NTHANCGGKCLSAEYTD 137
>01_06_0954 - 33322951-33323606,33324213-33325014
Length = 485
Score = 32.3 bits (70), Expect = 0.39
Identities = 19/76 (25%), Positives = 30/76 (39%)
Frame = +2
Query: 401 ALFVPSGTMSNLIAIMVHCNKRGSEAFVGDLSHIYKYEVGGASHLAGVMLSTVANKPDGT 580
A P+ T+ + +HC SE V + GG HL+ ++ A + +
Sbjct: 26 AAAAPAPTVWFALKRSLHCRSEPSEVHVPRPKAVAAAAAGGGGHLSAIVTKRAAPRSGCS 85
Query: 581 FDLQELEDRIRGSNIH 628
+ L D I GS H
Sbjct: 86 RSIANLRDVIHGSKRH 101
>03_03_0129 -
14684003-14684123,14684205-14684323,14684406-14684501,
14684605-14684712,14684974-14685060,14685135-14685338,
14685429-14685488,14686096-14686264,14686400-14686473,
14686586-14686897,14687054-14687212
Length = 502
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 335 YGEDPTVNALENKIAALLGKQAALFVPSGTMSNL 436
YG +PT ALE K++AL ++ +FV SG +++
Sbjct: 169 YG-NPTTEALEKKMSALEKAESTVFVASGMYASV 201
>12_01_0247 - 1836971-1837810
Length = 279
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -1
Query: 694 RQDLSSAVIMGIFDGNHSRYWFMYIRTPNSILQLLQVESAVGFIGHGRK 548
RQ + + G++ + YW ++ P+ +L L E A +GH R+
Sbjct: 127 RQFCNGVSLFGLYWEHVLSYWNWHVERPSEVLFLTYEELAADTLGHLRR 175
>06_03_1503 -
30621089-30621170,30621258-30621438,30621462-30621510,
30621777-30621842,30621976-30622014,30622414-30622779,
30623290-30623448,30623805-30623993,30624877-30625168,
30626251-30626597,30627239-30627433,30627518-30627798,
30629525-30629690
Length = 803
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2
Query: 245 HVVDLRSDTVTKPTKAMKHAMVNSALGDDV--YGEDPTVNALENKIAALLGKQAALFVPS 418
H+V + DT+ +P K H M+ S DD+ Y E + +L + + KQ LFV S
Sbjct: 200 HLVYITMDTILRPDKVWLH-MLESNQSDDICLYHEKDDMFSLGLQTSE--SKQ-YLFVES 255
Query: 419 GTMSNLIAIMVHCNKRGSEAFV 484
G+ + + +K+ E V
Sbjct: 256 GSKNTSFIFYLDISKQSKELVV 277
>10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376
Length = 418
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 570 PTALSTCKSWRIELGVRIYMNQ*RLWLPS-KIPIITAEER 686
P LSTC+SW L +R+ +N L+L + +P T ER
Sbjct: 379 PARLSTCQSWNHHLDLRLSLN---LYLQAYDMPSYTMTER 415
>06_01_0294 + 2151131-2151529
Length = 132
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/83 (21%), Positives = 34/83 (40%)
Frame = -2
Query: 492 RSPTNASDPRLLQCTIMAIRLDIVPDGTNKAACLPSSAAILFSKAFTVGSSP*TSSPKAE 313
RS S R CT + I L N + +P+S + ++ S +S P +
Sbjct: 50 RSQATTSMIRCSSCTSLTILLTGATSSVNGSNQMPTSKISMIDRSIGFSLSSSSSDPVSS 109
Query: 312 FTIACFIALVGFVTVSERKSTTC 244
+ +A +A++ + S + C
Sbjct: 110 WILAFLLAMIMMNSNSNKNLQFC 132
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 236 KMAHVVDLRSDTVTKPTKAMKHAMVNSALGDDVYGEDPTVNALENKIAALLGKQAALFVP 415
K + + + + T T+ K+ A V++ G +V G+D NAL N++ + + VP
Sbjct: 247 KDSMIAEAGTVTHTRHEKSTSDAAVSTGRGHEVQGQDEAANAL-NQVGQCVSSSGSHKVP 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,888
Number of Sequences: 37544
Number of extensions: 328779
Number of successful extensions: 818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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