Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p15
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5217| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_531| Best HMM Match : wnt (HMM E-Value=0)                           29   2.8  
SB_59529| Best HMM Match : BPL_C (HMM E-Value=7.5)                     29   3.7  
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_38798| Best HMM Match : UPF0004 (HMM E-Value=2.8)                   28   8.5  

>SB_5217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 266 DTVTKPTKAMKHAMVNSALGDDVYGEDPTVNALENKIAALLGKQAALFVPSGTMSNLIAI 445
           D VTK    ++H M  S+LGD+       ++ LE+ +AA   ++  +      +S  I  
Sbjct: 180 DIVTKSISPVEHKMAGSSLGDESRMYQSEISRLEDLLAATRAERDEVGSKYMAVSERITA 239

Query: 446 MVHCNK 463
            V  NK
Sbjct: 240 RVQKNK 245


>SB_531| Best HMM Match : wnt (HMM E-Value=0)
          Length = 646

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 578 TFDLQELEDRIRGSNIHEPVTAMVAVENTHNYCGGKVLPLKFLD 709
           TF  + ++ R RGS I  P   ++   N HN  GG++   KF+D
Sbjct: 463 TFATRFVDARERGSGIGSPARVLM---NLHNNRGGRLAVKKFMD 503


>SB_59529| Best HMM Match : BPL_C (HMM E-Value=7.5)
          Length = 350

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -2

Query: 543 TPAKCDAPPTSYL*MCERSPTNASDPRL-LQCTIMAIRLDIVPDGTNKAACLPSSAAILF 367
           TP  C++P       C+++P+  SDPR+ +      +  D  P  T +A   P + +   
Sbjct: 34  TPQACNSPLAI---SCQQTPSLTSDPRVQVPRKAHCLIWDQAPPPTPQACNSPLAISCQQ 90

Query: 366 SKAFTVGSSP*TSSPKAEFTIAC 298
           +  FT G       P + + + C
Sbjct: 91  TPPFTRGQLVQREQPSSNYLVRC 113


>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +2

Query: 419  GTMSNLIAIMVHCNKRGSEAFVGDLSHIYKYEVGGASHLAGV---MLSTVANKPDGTF 583
            G  + L + M   NK G+E FV +    + +    ASH  GV    + T+    DG F
Sbjct: 1718 GAKTELDSAMKELNKEGAERFVREQGCEWIFNPPHASHFGGVWERQIRTIRQVLDGMF 1775


>SB_38798| Best HMM Match : UPF0004 (HMM E-Value=2.8)
          Length = 169

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 208 LIDEITAKLQMILIELHSRYLLYLSH 131
           ++D +TAK+QM+L+E      L L+H
Sbjct: 99  MVDAVTAKIQMLLVEKKVDEALQLAH 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,123,809
Number of Sequences: 59808
Number of extensions: 379586
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)