Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p14
         (370 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110833-1|AAI10834.1|  952|Homo sapiens POLR1B protein protein.       28   8.2  
AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens ...    28   8.2  
AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens ...    28   8.2  
AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein.              28   8.2  

>BC110833-1|AAI10834.1|  952|Homo sapiens POLR1B protein protein.
          Length = 952

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 ILTRDVFEVLENNCSEDNTERLETSEVL 228
           ++TR +F + +  C EDN + L   EVL
Sbjct: 348 LMTRKLFALAKGGCMEDNPDSLVNQEVL 375


>AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46164 fis, clone TESTI4002799, highly  similar
           to DNA-directed RNA polymerase I 135 kDa polypeptide (EC
           2.7.7.6). ).
          Length = 1135

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 ILTRDVFEVLENNCSEDNTERLETSEVL 228
           ++TR +F + +  C EDN + L   EVL
Sbjct: 348 LMTRKLFALAKGECMEDNPDSLVNQEVL 375


>AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12471 fis, clone NT2RM1000894, highly similar to
           DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
           2.7.7.6). ).
          Length = 1079

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 ILTRDVFEVLENNCSEDNTERLETSEVL 228
           ++TR +F + +  C EDN + L   EVL
Sbjct: 292 LMTRKLFALAKGECMEDNPDSLVNQEVL 319


>AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein.
          Length = 1135

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 ILTRDVFEVLENNCSEDNTERLETSEVL 228
           ++TR +F + +  C EDN + L   EVL
Sbjct: 348 LMTRKLFALAKGECMEDNPDSLVNQEVL 375


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,994,404
Number of Sequences: 237096
Number of extensions: 679100
Number of successful extensions: 1053
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)