Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p14
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22500.1 68418.m02626 acyl CoA reductase, putative / male-ste...    31   0.18 
At3g44540.1 68416.m04787 acyl CoA reductase, putative similar to...    31   0.32 
At3g11260.1 68416.m01369 homeobox-leucine zipper transcription f...    29   1.3  
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    27   3.9  
At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containi...    27   5.2  
At1g78230.1 68414.m09116 leucine-rich repeat family protein            27   5.2  
At2g25565.1 68415.m03060 hypothetical protein                          26   6.8  

>At5g22500.1 68418.m02626 acyl CoA reductase, putative /
           male-sterility protein, putative similar to acyl CoA
           reductase [Simmondsia chinensis] GI:5020215; contains
           Pfam profile PF03015: Male sterility protein; identical
           to cDNA male sterility 2-like protein GI:1491614
          Length = 491

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 121 SMERRYRVILTRDVFEVLENNCSEDNTERLETSEVLP 231
           +M+R    ++  D+F+VL NN  EDN   L   +++P
Sbjct: 53  AMQRLRSEVMEIDLFKVLRNNLGEDNLNALMREKIVP 89


>At3g44540.1 68416.m04787 acyl CoA reductase, putative similar to
           acyl CoA reductase [Simmondsia chinensis] GI:5020215;
           contains Pfam profile PF03015: Male sterility protein
          Length = 433

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 121 SMERRYRVILTRDVFEVLENNCSEDNTERLETSEVLP 231
           +M+R +  +L +D+F VL+N   ++N +   T +V+P
Sbjct: 53  AMQRFHSEVLEKDLFRVLKNALGDENLKAFITEKVVP 89


>At3g11260.1 68416.m01369 homeobox-leucine zipper transcription
           factor family protein similar to wuschel protein
           (GI:22087128) [Arabidopsis thaliana]; supporting cDNA
           gi|24953994|gb|AY150812.1|
          Length = 182

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 151 TRDVFEVLENNCSEDNTERLETSEVLP 231
           TRDVFE+ E +C E+  + +ET ++ P
Sbjct: 100 TRDVFEISEEDCQEEE-KVIETLQLFP 125


>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 154 RDVFEVLENNCSEDNTERLETSEVLPDFEH 243
           RD+ + L N CS   +E L+ +E+  +F H
Sbjct: 530 RDLIQALTNACSLKQSEELKLAEIRNNFIH 559


>At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 634

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 112 FWKSMERRYRVILTRDVFEVLENNCSEDNTERLETSEVLPDFEH 243
           F K MER ++ +  R + E + N CS  N    E S++L + EH
Sbjct: 525 FRKCMERDHKTVTRRVLSEFVLNLCS--NGHSGEASQLLREREH 566


>At1g78230.1 68414.m09116 leucine-rich repeat family protein
          Length = 676

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 362 LKKCFEFYYRYRNYYIPPLGSQAVIKKINAIS 267
           +KKCF F+ R   +YI   G+ A   ++  IS
Sbjct: 63  IKKCFLFFRRRFFFYIHRFGALATSNRLRLIS 94


>At2g25565.1 68415.m03060 hypothetical protein
          Length = 206

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 109 GFWKSMERRYRVILTRDVFEVLENNC-SEDNTERLETSEVLPDFEHHCKQLYYHDIAF 279
           GF + +     V+LT++VF V+  +C  ++ T+ +E     P    +    Y +D  F
Sbjct: 110 GFLQRLFMFVNVVLTQEVFSVIPVSCLPKEETQEVEDESTCPICLENFLNDYVNDEVF 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,638,130
Number of Sequences: 28952
Number of extensions: 111596
Number of successful extensions: 259
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)