Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p13
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   284   4e-77
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   277   7e-75
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   256   1e-68
At2g22340.1 68415.m02651 hypothetical protein                          33   0.23 
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.31 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.7  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   3.8  
At2g34150.1 68415.m04180 expressed protein                             29   3.8  
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha...    28   5.0  
At5g09560.1 68418.m01107 KH domain-containing protein various pr...    27   8.8  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    27   8.8  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    27   8.8  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  284 bits (696), Expect = 4e-77
 Identities = 128/202 (63%), Positives = 156/202 (77%)
 Frame = +2

Query: 80  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 259
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 260 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 439
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 440 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 619
             DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191

Query: 620 VLPRDQRWDVVVDLFFYRDPEE 685
            +   Q+WDV+VDLFFYR+PEE
Sbjct: 192 TIAAGQKWDVMVDLFFYREPEE 213


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  277 bits (678), Expect = 7e-75
 Identities = 124/198 (62%), Positives = 153/198 (77%)
 Frame = +2

Query: 92  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 271
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 272 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 451
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 452 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 631
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 632 DQRWDVVVDLFFYRDPEE 685
            Q+WDV+VDLFFYR+PEE
Sbjct: 197 AQKWDVMVDLFFYREPEE 214


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  256 bits (626), Expect = 1e-68
 Identities = 115/189 (60%), Positives = 144/189 (76%)
 Frame = +2

Query: 92  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 271
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 272 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 451
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 452 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 631
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 632 DQRWDVVVD 658
            Q+WDV+V+
Sbjct: 197 AQKWDVMVN 205


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 130 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 249
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 413 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 562
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 368 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 469
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 509 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 646
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At2g34150.1 68415.m04180 expressed protein
          Length = 700

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -3

Query: 541 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 371
           D  +H+  W      S   +     FSN L  +  +Q +QE+   E S D  S  TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363


>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
           A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
           from [Arabidopsis thaliana]
          Length = 78

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 196 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 318
           P  Q   Y GK  +     + +   R  V HL+ ALR  CC
Sbjct: 38  PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78


>At5g09560.1 68418.m01107 KH domain-containing protein various
           predicted RNA binding proteins, Arabidopsis thaliana
          Length = 563

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 410 EPRLLIVLDPAQDHQPITEASYVNIPVI---ALCNTDSPLRFVDIAIPCNTKSS 562
           +PR+  +  P+ DH+ IT AS  N PV     L  +   +R VD+ I C+ +S+
Sbjct: 271 QPRIDYLPHPSYDHRLITSAS-KNPPVTIKQPLQASKDDIRQVDLKILCSNESA 323


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/78 (29%), Positives = 27/78 (34%)
 Frame = +1

Query: 100 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 279
           CH   C   P  G++   P G    Q       CD +A   G TC     C  HR P  C
Sbjct: 312 CHAGECGLCPYQGKRS-CPCGKRFYQGLS----CDVVAPLCGGTCDKVLGCGYHRCPERC 366

Query: 280 VRHLITALRSACCTEVCR 333
            R           T+ CR
Sbjct: 367 HRGPCLETCRIVVTKSCR 384


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 568 RVGRLGVAWDSNVHKS 521
           R GR+G  WD+NVH++
Sbjct: 107 RSGRIGRCWDANVHRA 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,043,233
Number of Sequences: 28952
Number of extensions: 400427
Number of successful extensions: 938
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)