Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p12
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.66 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    29   0.87 
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    28   1.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.0  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    27   2.0  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    27   3.5  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.1  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   8.1  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 343  SPKSIIIGTRRKEVFGRCKKF*FQKAKTSRQRPKSRNWYAPC 468
            SP+ +II T  +    +C+ F         + P S  +YA C
Sbjct: 1960 SPECVIISTMNRSCDSKCRYFLLTAIANQLRYPSSHTYYASC 2001


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 638 RHLATEKLVLLLFESVDLRDTIYIQEFFA 552
           R LAT  L+ L +   DLRD + IQE  A
Sbjct: 560 RRLATSTLIRLFYYYYDLRDAVPIQETLA 588


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +1

Query: 187 IVKRFYYERKVMYPSIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLSPKS 354
           I K F     ++ P + Q    + +++  PR F  + C  V   L   +  + PKS
Sbjct: 548 IAKVFQEYSTIINPEVQQRACEYLQLLKMPRDFLQLVCDEVPPFLDGNRDGVHPKS 603


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 102 PICVIARQLLFKNIESIVTAKPNTVQT 182
           P  V+  +++FK  ES++  KPN VQ+
Sbjct: 771 PSIVLTSKVVFKIAESLILLKPNEVQS 797


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 121 DNCYLRILKALSQQNQILYKHIIVKRFYY 207
           D C++R+L A + Q+ ILY    VK  ++
Sbjct: 275 DPCHIRVLNANTDQSLILYTQSDVKNLHF 303


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 437 GQNLVTGMLHAMLLKTYADIAKELGVAPG 523
           GQ  + GMLHA L  +YA+ + +    PG
Sbjct: 467 GQPQIPGMLHASLSNSYAEPSTQNSFIPG 495


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +3

Query: 117 ARQLLFKNIESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGT 296
           +R  + K+I++   A  +  + YYS K+   K       +  S + L+ ++     L+G 
Sbjct: 204 SRSAIQKDIKAKERAVEHIAKKYYSSKITKEKVRWCLYSIADSNSYLRYNRDPIAKLIGL 263

Query: 297 V--HFSKQSIED 326
           V  +FS  +++D
Sbjct: 264 VEAYFSPDTVDD 275


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 352 SLATKFSETSSIDCLLKCTVPKRTTVAC 269
           ++  K +    I  LLK  +P  TT+AC
Sbjct: 554 NIIDKLTSNEQISLLLKIIIPSLTTLAC 581


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 289 KRTTVACLSFCKSVADFGKCW 227
           K++ + C   C S+ DF K W
Sbjct: 324 KKSLILCYVQCPSIEDFNKIW 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,836
Number of Sequences: 5004
Number of extensions: 64080
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)