Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10p12
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0367 - 24444268-24444393,24444524-24444635,24444721-244448...    42   4e-04
07_03_0171 + 14687791-14687898,14688465-14688550,14689474-146895...    30   2.1  
03_06_0426 + 33855701-33856135                                         29   2.8  
01_06_1620 + 38697960-38698131,38698532-38700732                       28   6.4  

>05_05_0367 -
           24444268-24444393,24444524-24444635,24444721-24444821,
           24445727-24445831,24445929-24446015,24446630-24446689,
           24446834-24446881,24447571-24447816
          Length = 294

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 32/92 (34%), Positives = 44/92 (47%)
 Frame = +2

Query: 329 FRELCRQRVSXXXXXXXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKEL 508
           F ELC  RV+             +  D  K K+     N   G+L++  L   A +A +L
Sbjct: 101 FLELCASRVAILTPQNLQVPTMNEMIDMWKKKK----MNTF-GILYSWFL---AKVASQL 152

Query: 509 GVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQI 604
            V PG EFR A+ E     G K+ LGDRP+Q+
Sbjct: 153 DVLPGAEFRVAFEEAMSYGG-KVILGDRPVQL 183


>07_03_0171 +
           14687791-14687898,14688465-14688550,14689474-14689546,
           14689661-14689741,14690010-14690073,14690673-14690760,
           14690843-14690927,14692190-14692228
          Length = 207

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 268 NKPRSFFWVQCTSVNSLLKMFQRTLSPKSIIIGTRRKEVFG 390
           NKP    W   TS+ +L +  +    P  +I+G  R  VFG
Sbjct: 60  NKPECRTWKHGTSLRTLFRRSENLQGPCLLIVGDMRGAVFG 100


>03_06_0426 + 33855701-33856135
          Length = 144

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 464 HAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARA 619
           H +  ++ A  A   GV  G E  R   +MQ++P C++   +  + + + RA
Sbjct: 46  HGLFARSLALFADLHGVRGGEELDRKARKMQRLPPCRILSQELDVLVELDRA 97


>01_06_1620 + 38697960-38698131,38698532-38700732
          Length = 790

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 316 DCLLKCTVPKRTTVACLSFCKSVADFG 236
           DC++ C +  +  +  +SF   VADFG
Sbjct: 613 DCIIHCDIKPQNILLDMSFTPKVADFG 639


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,311,118
Number of Sequences: 37544
Number of extensions: 356024
Number of successful extensions: 869
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)